We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DSTN
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • DSTN
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:184.0 nTPM
HPA Brain:86.5 nTPM
GTEx:184.0 nTPM
FANTOM5:313.4 Scaled Tags Per Million
Pig:115.5 nTPM
Mouse:220.2 nTPM
Allen mouse:8.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.5
Sample id Sample description nTPM
Amygdala
nTPM: 86.5
2514 Male, age 75, right hemisphere 91.8
2695 Female, age 67, right hemisphere 91.5
2814 Male, age 76, right hemisphere 90.4
1987 Female, age 91, left hemisphere 85.8
2517 Female, age 94, left hemisphere 72.7
Basal amygdala
nTPM: 70.6
2609 Male, age 75, right hemisphere 81.8
2110 Male, age 80, left hemisphere 78.3
1955 Male, age 76, both hemispheres 75.2
2685 Female, age 94, left hemisphere 72.5
2243 Female, age 91, right hemisphere 59.9
2827 Female, age 67, right hemisphere 56.2
Central amygdala
nTPM: 77.9
2826 Female, age 94, left hemisphere 92.7
2515 Male, age 75, right hemisphere 89.0
1905 Male, age 76, both hemispheres 75.4
2239 Male, age 80, left hemisphere 71.8
2701 Female, age 91, right hemisphere 60.5
Corticomedial amygdala
nTPM: 76.9
2829 Male, age 80, left hemisphere 90.1
2428 Male, age 75, right hemisphere 88.0
2240 Male, age 76, both hemispheres 78.1
2429 Female, age 94, left hemisphere 76.8
2242 Female, age 91, right hemisphere 76.4
2535 Female, age 67, right hemisphere 52.1
Lateral amygdala
nTPM: 69.8
1883 Male, age 76, both hemispheres 87.1
2516 Male, age 75, right hemisphere 87.1
2534 Female, age 94, left hemisphere 82.1
2830 Female, age 67, right hemisphere 67.0
2256 Male, age 80, left hemisphere 50.8
2255 Female, age 91, right hemisphere 44.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 184.0
Samples: 152

Max nTPM: 617.0
Min nTPM: 90.3
Std nTPM: 70.9
Median nTPM: 165.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 617.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 494.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 363.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 355.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 342.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 329.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 323.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 319.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 295.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 284.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 283.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 278.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 272.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 265.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 264.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 259.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 256.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 254.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 253.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 252.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 251.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 249.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 248.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 245.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 245.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 240.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 240.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 237.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 228.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 226.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 225.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 225.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 217.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 215.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 215.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 211.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 210.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 208.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 207.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 207.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 205.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 205.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 205.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 202.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 201.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 199.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 199.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 195.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 194.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 194.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 194.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 192.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 191.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 189.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 189.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 188.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 187.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 186.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 185.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 184.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 184.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 183.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 181.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 181.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 181.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 179.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 178.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 178.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 174.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 174.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 173.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 173.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 172.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 172.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 166.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 166.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 164.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 162.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 161.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 161.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 161.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 160.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 159.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 159.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 159.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 156.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 155.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 154.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 154.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 154.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 153.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 151.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 151.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 150.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 149.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 149.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 148.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 148.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 147.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 147.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 145.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 144.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 143.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 142.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 141.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 141.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 140.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 140.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 139.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 139.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 138.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 137.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 134.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 134.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 133.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 131.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 129.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 129.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 128.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 125.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 125.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 125.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 125.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 124.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 123.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 123.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 123.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 123.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 123.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 122.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 119.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 114.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 112.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 109.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 109.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 103.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 100.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 96.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 90.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

313.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 313.4
FF:10151-102I7 76 years, female 313.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.5
Pig sample Sample description nTPM
Amygdala
nTPM: 115.5
Samples: 4

Max nTPM: 157.5
Min nTPM: 100.0
Sample A Female 157.5
Sample B Female 100.7
Sample C Male 100.0
Sample D Male 103.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 220.2
Samples: 4

Max nTPM: 231.1
Min nTPM: 213.7
Sample A Male 216.4
Sample B Male 231.1
Sample C Female 213.7
Sample D Female 219.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.4
74658076 Antisense, RP_060220_04_D01, Mouse strain C57BL/6J (56 days, male) 9.8
69671630 Antisense, RP_050428_01_H10, Mouse strain C57BL/6J (56 days, male) 7.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org