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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:109.5 nTPM
HPA Brain:105.0 nTPM
GTEx:109.5 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Pig:58.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 100.0
1981 Female, age 72, midline 112.9
2565 Male, age 75, midline 112.0
2194 Female, age 79, both hemispheres 98.1
2816 Male, age 47, midline 91.3
2048 Male, age 55, midline 86.0
Cervical spinal cord, dorsal horn
nTPM: 101.3
2173 Female, age 72, unknown 121.0
2296 Male, age 66, both hemispheres 121.0
2069 Male, age 47, both hemispheres 106.3
1877 Male, age 55, unknown 99.1
2297 Male, age 75, both hemispheres 85.5
2721 Male, age 90, both hemispheres 75.0
Cervical spinal cord, ventral horn
nTPM: 105.0
2809 Male, age 90, both hemispheres 126.1
2098 Female, age 72, unknown 120.5
2480 Male, age 75, both hemispheres 105.5
2068 Male, age 55, unknown 102.4
2295 Male, age 66, both hemispheres 88.9
2820 Female, age 79, both hemispheres 86.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 109.5
Samples: 159

Max nTPM: 177.5
Min nTPM: 63.6
Std nTPM: 20.0
Median nTPM: 109.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 177.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 163.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 157.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 151.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 149.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 144.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 142.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 142.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 140.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 139.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 137.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 137.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 136.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 136.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 136.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 136.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 133.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 132.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 131.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 130.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 130.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 130.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 129.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 128.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 128.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 127.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 127.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 127.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 127.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 126.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 125.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 125.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 125.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 125.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 124.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 124.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 124.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 124.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 123.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 123.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 122.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 122.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 121.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 120.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 120.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 120.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 120.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 120.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 119.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 118.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 118.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 117.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 116.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 116.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 116.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 116.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 116.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 115.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 115.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 114.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 114.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 114.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 113.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 113.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 112.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 112.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 112.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 112.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 112.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 112.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 112.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 111.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 109.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 109.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 109.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 109.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 109.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 108.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 108.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 107.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 106.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 106.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 106.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 106.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 105.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 105.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 105.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 104.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 103.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 103.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 101.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 101.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 100.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 100.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 100.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 100.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 99.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 99.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 99.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 99.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 98.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 98.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 97.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 97.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 96.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 96.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 96.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 96.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 96.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 95.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 94.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 94.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 94.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 94.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 94.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 93.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 91.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 91.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 91.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 91.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 90.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 90.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 89.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 89.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 89.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 89.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 88.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 88.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 88.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 88.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 87.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 86.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 85.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 85.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 84.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 83.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 81.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 81.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 81.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 80.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 79.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 79.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 78.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 78.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 74.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 73.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 67.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 63.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 92.7
FF:10181-103D1 60 years, female 107.1
FF:10159-103A6 76 years, female 78.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 58.5
Samples: 4

Max nTPM: 76.0
Min nTPM: 49.8
Sample A Female 49.8
Sample B Female 52.6
Sample C Male 76.0
Sample D Male 55.5
Ventral spinal cord
nTPM: 58.0
Samples: 4

Max nTPM: 63.8
Min nTPM: 50.3
Sample A Female 50.3
Sample B Female 59.3
Sample C Male 63.8
Sample D Male 58.4

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