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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:397.2 nTPM
HPA Brain:200.9 nTPM
GTEx:397.2 nTPM
FANTOM5:527.6 Scaled Tags Per Million
Pig:413.6 nTPM
Mouse:479.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.9
Sample id Sample description nTPM
Amygdala
nTPM: 182.4
2814 Male, age 76, right hemisphere 219.8
2514 Male, age 75, right hemisphere 182.1
1987 Female, age 91, left hemisphere 181.8
2695 Female, age 67, right hemisphere 166.1
2517 Female, age 94, left hemisphere 162.3
Basal amygdala
nTPM: 185.0
2243 Female, age 91, right hemisphere 229.2
2609 Male, age 75, right hemisphere 202.2
1955 Male, age 76, both hemispheres 194.5
2685 Female, age 94, left hemisphere 174.7
2110 Male, age 80, left hemisphere 173.8
2827 Female, age 67, right hemisphere 135.4
Central amygdala
nTPM: 180.3
2701 Female, age 91, right hemisphere 204.9
2239 Male, age 80, left hemisphere 192.4
1905 Male, age 76, both hemispheres 186.2
2515 Male, age 75, right hemisphere 162.3
2826 Female, age 94, left hemisphere 155.8
Corticomedial amygdala
nTPM: 200.9
2242 Female, age 91, right hemisphere 225.8
2240 Male, age 76, both hemispheres 212.5
2829 Male, age 80, left hemisphere 206.0
2429 Female, age 94, left hemisphere 204.6
2535 Female, age 67, right hemisphere 202.9
2428 Male, age 75, right hemisphere 153.4
Lateral amygdala
nTPM: 158.2
1883 Male, age 76, both hemispheres 194.7
2534 Female, age 94, left hemisphere 166.5
2255 Female, age 91, right hemisphere 162.2
2516 Male, age 75, right hemisphere 157.7
2256 Male, age 80, left hemisphere 145.9
2830 Female, age 67, right hemisphere 122.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 397.2
Samples: 152

Max nTPM: 1017.6
Min nTPM: 199.6
Std nTPM: 136.7
Median nTPM: 378.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1017.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1011.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 973.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 898.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 707.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 662.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 639.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 619.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 603.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 603.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 594.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 570.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 562.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 541.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 521.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 518.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 517.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 512.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 512.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 504.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 504.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 504.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 503.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 495.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 487.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 486.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 483.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 482.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 479.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 474.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 472.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 471.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 464.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 464.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 461.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 460.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 459.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 456.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 453.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 447.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 447.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 438.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 435.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 434.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 434.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 433.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 430.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 425.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 425.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 425.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 414.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 413.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 411.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 411.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 410.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 409.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 408.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 404.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 401.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 401.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 400.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 399.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 398.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 395.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 394.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 393.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 392.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 389.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 387.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 387.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 382.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 382.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 381.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 381.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 380.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 379.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 377.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 375.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 371.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 369.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 365.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 359.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 358.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 357.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 355.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 353.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 353.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 353.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 342.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 341.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 340.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 339.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 337.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 337.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 337.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 336.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 333.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 327.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 327.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 327.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 327.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 326.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 324.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 324.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 323.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 321.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 321.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 319.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 318.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 318.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 317.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 316.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 313.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 312.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 311.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 308.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 308.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 304.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 304.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 303.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 302.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 302.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 301.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 301.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 296.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 292.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 292.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 287.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 282.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 280.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 276.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 275.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 273.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 270.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 270.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 267.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 267.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 265.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 265.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 264.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 260.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 256.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 251.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 250.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 248.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 243.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 238.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 217.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 211.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 208.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 206.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 199.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

527.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 527.6
FF:10151-102I7 76 years, female 527.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.6
Pig sample Sample description nTPM
Amygdala
nTPM: 413.6
Samples: 4

Max nTPM: 545.5
Min nTPM: 310.6
Sample A Female 545.5
Sample B Female 404.4
Sample C Male 393.7
Sample D Male 310.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

479.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 479.0
Samples: 4

Max nTPM: 487.6
Min nTPM: 471.7
Sample A Male 481.8
Sample B Male 471.7
Sample C Female 487.6
Sample D Female 475.0

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