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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:236.0 nTPM
FANTOM5:763.8 Scaled Tags Per Million
Pig:592.8 nTPM
Mouse:477.6 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 177.5
2301 Female, age 85, both hemispheres 217.4
2188 Female, age 91, both hemispheres 191.3
2090 Male, age 80, both hemispheres 152.8
1984 Male, age 76, both hemispheres 148.6
Area postrema
nTPM: 142.7
2054 Male, age 76, both hemispheres 161.3
2799 Male, age 61, both hemispheres 135.2
2306 Male, age 80, both hemispheres 131.6
Dorsal cochlear nucleus
nTPM: 156.7
2187 Female, age 91, both hemispheres 186.2
2370 Male, age 61, both hemispheres 166.2
2802 Male, age 74, right hemisphere 152.1
2058 Male, age 76, both hemispheres 141.6
2378 Male, age 80, both hemispheres 137.5
Dorsal medullary reticular nucleus
nTPM: 178.7
2040 Female, age 85, both hemispheres 218.5
2373 Male, age 61, both hemispheres 176.7
2088 Male, age 76, both hemispheres 140.9
Dorsal motor vagal complex
nTPM: 181.3
2813 Female, age 72, unknown 251.7
2133 Female, age 91, both hemispheres 216.8
2000 Male, age 74, unknown 215.2
2844 Male, age 55, unknown 192.2
2643 Male, age 74, both hemispheres 168.5
2185 Male, age 76, both hemispheres 143.8
2807 Female, age 85, both hemispheres 143.1
2797 Male, age 61, both hemispheres 118.7
Dorsal tegmental nucleus
nTPM: 186.0
2358 Male, age 61, both hemispheres 231.7
2083 Male, age 80, both hemispheres 197.2
2326 Male, age 74, both hemispheres 164.6
1936 Male, age 76, left hemisphere 150.3
Dorsolateral tegmental area
nTPM: 170.6
2337 Male, age 61, both hemispheres 190.7
2654 Male, age 80, both hemispheres 187.7
2141 Male, age 76, both hemispheres 179.1
2751 Female, age 85, both hemispheres 159.6
2360 Male, age 74, both hemispheres 135.8
Gigantocellular reticular nuclei, medullary
nTPM: 174.6
2462 Male, age 74, both hemispheres 197.4
2314 Male, age 61, both hemispheres 183.1
1876 Female, age 85, both hemispheres 182.9
2310 Male, age 80, both hemispheres 176.1
2022 Male, age 76, right hemisphere 155.5
2387 Female, age 91, both hemispheres 152.9
Gigantocellular reticular nuclei, pars
nTPM: 198.1
2168 Male, age 76, both hemispheres 237.7
2336 Male, age 61, both hemispheres 211.1
2084 Female, age 85, both hemispheres 189.2
2706 Male, age 80, both hemispheres 176.9
2330 Male, age 80, both hemispheres 175.4
Inferior olive
nTPM: 175.9
2628 Female, age 91, both hemispheres 213.0
2563 Male, age 74, both hemispheres 189.8
2085 Female, age 85, both hemispheres 182.9
2178 Male, age 61, both hemispheres 171.4
2379 Male, age 80, both hemispheres 122.6
Kolliker-Fuse nucleus
nTPM: 207.5
2793 Female, age 91, left hemisphere 242.8
2163 Male, age 80, both hemispheres 214.8
2315 Male, age 76, right hemisphere 164.8
Lateral lemniscal nuclei
nTPM: 203.4
2169 Male, age 76, both hemispheres 259.1
2036 Male, age 80, both hemispheres 215.8
2746 Female, age 85, left hemisphere 196.3
2453 Male, age 74, right hemisphere 182.4
2320 Female, age 91, left hemisphere 163.5
Lateral medullary reticular nucleus
nTPM: 185.7
2374 Male, age 61, both hemispheres 231.0
2044 Male, age 76, both hemispheres 196.4
2305 Male, age 74, both hemispheres 185.8
2190 Female, age 85, both hemispheres 170.6
2804 Female, age 91, both hemispheres 168.0
2852 Male, age 80, both hemispheres 162.4
Lateral parabrachial nucleus
nTPM: 196.8
2139 Female, age 85, right hemisphere 253.5
2013 Male, age 80, both hemispheres 182.6
2790 Male, age 61, both hemispheres 178.9
2792 Male, age 76, both hemispheres 172.0
Lateral vestibular nucleus
nTPM: 196.8
2184 Male, age 76, both hemispheres 210.0
2311 Male, age 80, both hemispheres 183.6
Locus coeruleus
nTPM: 220.3
2720 Male, age 74, both hemispheres 278.9
2123 Female, age 91, both hemispheres 247.4
2014 Male, age 55, unknown 226.4
2162 Male, age 80, both hemispheres 209.3
1980 Male, age 76, both hemispheres 208.9
2788 Male, age 74, unknown 192.8
2317 Female, age 72, unknown 178.4
Medial olivary nucleus
nTPM: 170.1
2851 Male, age 80, both hemispheres 205.4
1943 Male, age 61, both hemispheres 168.6
1962 Male, age 76, both hemispheres 156.6
2138 Female, age 91, both hemispheres 150.0
Medial parabrachial nucleus
nTPM: 193.1
2854 Male, age 80, both hemispheres 246.4
2170 Female, age 91, both hemispheres 212.6
2156 Male, age 61, both hemispheres 204.4
2786 Male, age 76, both hemispheres 178.0
2463 Female, age 85, right hemisphere 124.0
Medial periolivary nuclei
nTPM: 195.1
2171 Female, age 85, both hemispheres 264.7
2063 Male, age 76, both hemispheres 211.4
2791 Male, age 74, right hemisphere 191.1
2458 Female, age 91, both hemispheres 162.5
2081 Male, age 80, both hemispheres 145.8
Medial vestibular nucleus
nTPM: 220.1
2624 Male, age 61, both hemispheres 286.5
2801 Male, age 74, both hemispheres 231.2
2803 Female, age 91, both hemispheres 229.2
2134 Male, age 76, both hemispheres 216.0
2743 Female, age 85, both hemispheres 181.0
2093 Male, age 80, both hemispheres 176.5
Motor facial nucleus
nTPM: 218.2
2697 Female, age 85, both hemispheres 277.7
2365 Male, age 74, right hemisphere 245.2
2062 Male, age 76, both hemispheres 227.3
2327 Male, age 80, both hemispheres 208.8
2795 Female, age 91, both hemispheres 175.8
2126 Male, age 61, both hemispheres 174.3
Motor hypoglossal nucleus
nTPM: 207.4
2461 Male, age 61, both hemispheres 288.3
2125 Female, age 91, both hemispheres 201.5
2132 Female, age 85, both hemispheres 201.3
2182 Male, age 80, both hemispheres 196.7
2277 Male, age 76, both hemispheres 149.3
Motor trigeminal nucleus
nTPM: 184.1
2335 Male, age 61, both hemispheres 214.8
2079 Male, age 80, both hemispheres 197.8
2560 Male, age 74, both hemispheres 189.7
2309 Male, age 76, both hemispheres 164.4
2321 Female, age 91, both hemispheres 154.1
Nuclei of the trapezoid body
nTPM: 215.0
2159 Male, age 61, both hemispheres 263.2
1983 Male, age 76, both hemispheres 258.4
2735 Female, age 85, both hemispheres 234.0
2166 Male, age 80, both hemispheres 177.4
2368 Female, age 91, both hemispheres 142.0
Nucleus ambiguus
nTPM: 155.3
2096 Female, age 85, both hemispheres 160.3
2071 Male, age 76, both hemispheres 150.2
Nucleus cuneatus
nTPM: 151.1
2564 Male, age 74, both hemispheres 172.9
2562 Male, age 61, both hemispheres 165.0
2376 Male, age 61, both hemispheres 164.2
2131 Male, age 76, both hemispheres 159.8
2381 Male, age 80, both hemispheres 156.5
2808 Female, age 85, both hemispheres 147.8
2100 Male, age 76, both hemispheres 139.8
2805 Female, age 91, both hemispheres 130.4
2380 Male, age 80, both hemispheres 124.1
Nucleus gracilis
nTPM: 163.1
2627 Male, age 74, both hemispheres 230.9
2382 Male, age 80, both hemispheres 149.3
2299 Female, age 85, both hemispheres 109.2
Nucleus raphe magnus
nTPM: 236.0
2172 Female, age 85, both hemispheres 307.5
2160 Male, age 61, both hemispheres 288.9
2455 Male, age 74, both hemispheres 239.4
2051 Male, age 76, both hemispheres 217.3
2328 Male, age 80, both hemispheres 203.5
2459 Female, age 91, both hemispheres 159.7
Nucleus raphe obscurus
nTPM: 181.2
2800 Male, age 61, midline 208.2
2845 Female, age 85, midline 199.0
2142 Male, age 76, midline 136.3
Nucleus raphe pallidus
nTPM: 197.5
1924 Male, age 61, midline 240.2
2183 Male, age 80, midline 208.1
2145 Male, age 76, midline 144.2
Nucleus tractus solitarii
nTPM: 151.3
2656 Male, age 76, both hemispheres 166.4
2191 Female, age 85, both hemispheres 158.3
2307 Male, age 80, both hemispheres 153.0
2144 Female, age 91, right hemisphere 127.3
Paramedian reticular nucleus
nTPM: 190.3
2050 Female, age 85, both hemispheres 232.9
2313 Male, age 61, both hemispheres 199.7
2057 Male, age 80, both hemispheres 173.9
2052 Male, age 76, both hemispheres 154.6
Parvicellular reticular nuclei
nTPM: 177.3
2095 Male, age 76, both hemispheres 181.5
2119 Male, age 80, both hemispheres 179.9
2558 Male, age 74, both hemispheres 170.6
Parvicellular reticular nuclei, medullary
nTPM: 202.2
2189 Female, age 91, both hemispheres 222.1
2181 Male, age 80, left hemisphere 196.6
2091 Female, age 85, both hemispheres 187.8
Pedunculopontine tegmental nucleus
nTPM: 203.6
2338 Male, age 61, both hemispheres 227.8
2334 Male, age 80, both hemispheres 201.3
1921 Female, age 85, both hemispheres 181.7
Peritrigeminal nucleus
nTPM: 199.5
2179 Male, age 61, both hemispheres 218.5
2136 Male, age 76, both hemispheres 195.3
2067 Female, age 85, both hemispheres 184.6
Pontine nuclei
nTPM: 220.3
2787 Female, age 85, both hemispheres 317.5
1863 Male, age 55, unknown 273.9
1968 Male, age 76, left hemisphere 227.7
2727 Male, age 61, right hemisphere 217.8
2109 Female, age 72, unknown 201.2
2454 Male, age 74, left hemisphere 188.5
2319 Female, age 91, both hemispheres 170.8
2115 Male, age 80, left hemisphere 165.0
Pontine raphe nucleus
nTPM: 210.1
2122 Female, age 85, midline 232.4
2853 Male, age 76, midline 187.9
Posteroventral cochlear nucleus
nTPM: 162.1
2752 Female, age 85, both hemispheres 180.2
2070 Male, age 76, both hemispheres 171.3
2135 Female, age 91, both hemispheres 163.9
2371 Male, age 61, both hemispheres 156.5
2341 Male, age 80, both hemispheres 138.3
Prepositus hypoglossal nucleus
nTPM: 172.0
2855 Female, age 85, right hemisphere 192.9
2086 Male, age 80, both hemispheres 151.1
Principal sensory trigeminal nucleus
nTPM: 206.0
2158 Male, age 61, both hemispheres 251.0
2367 Female, age 91, left hemisphere 199.8
2324 Male, age 76, both hemispheres 196.4
2008 Male, age 80, left hemisphere 176.7
Reticular pontine nucleus, caudal
nTPM: 185.8
2092 Male, age 76, both hemispheres 215.8
2332 Male, age 80, right hemisphere 201.6
2559 Male, age 74, both hemispheres 178.6
2457 Female, age 91, both hemispheres 147.1
Reticular pontine nucleus, oral
nTPM: 196.2
2361 Male, age 74, both hemispheres 212.5
2366 Female, age 91, both hemispheres 205.4
2167 Male, age 76, both hemispheres 195.3
2012 Female, age 85, both hemispheres 193.2
1939 Male, age 80, both hemispheres 174.5
Reticulotegmental nucleus
nTPM: 180.5
2325 Male, age 76, both hemispheres 206.7
2322 Female, age 91, both hemispheres 181.4
2333 Male, age 80, both hemispheres 175.6
2452 Male, age 74, both hemispheres 158.3
Spinal trigeminal nucleus, caudal
nTPM: 189.0
2390 Female, age 91, both hemispheres 249.3
2642 Male, age 74, both hemispheres 190.5
2312 Male, age 61, both hemispheres 188.4
2308 Male, age 80, both hemispheres 162.5
2447 Male, age 76, both hemispheres 154.2
Spinal trigeminal nucleus, interpolar
nTPM: 222.7
2625 Male, age 61, both hemispheres 334.6
2066 Male, age 76, right hemisphere 225.7
2389 Female, age 91, both hemispheres 207.1
2033 Male, age 80, both hemispheres 180.0
2386 Female, age 85, both hemispheres 165.9
Spinal trigeminal nucleus, oral
nTPM: 183.2
2164 Male, age 80, both hemispheres 201.8
2737 Female, age 85, both hemispheres 175.8
1978 Male, age 76, both hemispheres 172.0
Spinal vestibular nucleus
nTPM: 193.3
2796 Male, age 61, both hemispheres 238.6
2806 Female, age 85, both hemispheres 203.5
2186 Female, age 91, both hemispheres 202.0
2780 Male, age 80, both hemispheres 187.8
2748 Male, age 76, both hemispheres 179.3
2384 Male, age 74, both hemispheres 148.4
Subcoeruleus area
nTPM: 184.8
1958 Male, age 80, both hemispheres 219.7
2323 Female, age 91, left hemisphere 207.5
2089 Male, age 76, left hemisphere 191.5
2369 Female, age 85, left hemisphere 153.7
2451 Male, age 74, both hemispheres 151.6
Superior olive
nTPM: 206.6
1875 Female, age 85, both hemispheres 258.1
2329 Male, age 80, right hemisphere 196.1
2364 Male, age 74, right hemisphere 193.6
2561 Female, age 91, both hemispheres 193.1
2020 Male, age 76, both hemispheres 191.8
Superior vestibular nucleus
nTPM: 171.2
2383 Male, age 74, both hemispheres 181.5
2015 Male, age 80, both hemispheres 171.8
2061 Male, age 76, both hemispheres 160.4
Ventral medullary reticular nucleus
nTPM: 167.0
2060 Male, age 76, both hemispheres 171.8
2372 Male, age 61, both hemispheres 162.1
Ventral periolivary nuclei
nTPM: 214.6
2130 Female, age 85, both hemispheres 272.2
2165 Male, age 80, both hemispheres 225.2
2023 Male, age 76, both hemispheres 184.2
2794 Female, age 91, left hemisphere 176.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 178.3
2180 Male, age 61, both hemispheres 199.8
1986 Male, age 76, both hemispheres 192.7
2741 Female, age 85, both hemispheres 185.8
2302 Female, age 91, both hemispheres 164.1
2118 Male, age 80, both hemispheres 149.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 199.3
2840 Female, age 85, both hemispheres 253.8
1959 Male, age 76, both hemispheres 217.7
2359 Male, age 61, both hemispheres 199.6
2449 Male, age 74, both hemispheres 199.0
2161 Male, age 80, both hemispheres 185.6
2456 Female, age 91, both hemispheres 139.8

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

763.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 550.6
FF:10182-103D2 60 years, female 645.2
FF:10165-103B3 76 years, female 456.0
Medulla oblongata
Scaled Tags Per Million: 518.0
FF:10174-103C3 60 years, female 577.6
FF:10038-101F2 18-64 years, mixed 567.2
FF:10155-103A2 76 years, female 409.2
Pons
Scaled Tags Per Million: 763.8
FF:10033-101E6 18-54 years, mixed 763.8

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

592.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 480.8
Samples: 4

Max nTPM: 551.6
Min nTPM: 442.2
Sample A Female 442.2
Sample B Female 460.6
Sample C Male 551.6
Sample D Male 468.7
Pons
nTPM: 592.8
Samples: 4

Max nTPM: 670.7
Min nTPM: 483.7
Sample A Female 560.8
Sample B Female 483.7
Sample C Male 670.7
Sample D Male 655.9

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

477.6
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 477.6
Samples: 4

Max nTPM: 524.9
Min nTPM: 446.0
Sample A Male 462.8
Sample B Male 446.0
Sample C Female 524.9
Sample D Female 476.7

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