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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:41.4 nTPM
HPA Brain:98.5 nTPM
GTEx:41.4 nTPM
FANTOM5:204.9 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
Sample id Sample description nTPM
Amygdala
nTPM: 82.3
2695 Female, age 67, right hemisphere 108.8
2814 Male, age 76, right hemisphere 105.5
2517 Female, age 94, left hemisphere 74.9
2514 Male, age 75, right hemisphere 64.0
1987 Female, age 91, left hemisphere 58.3
Basal amygdala
nTPM: 98.5
2827 Female, age 67, right hemisphere 115.3
2685 Female, age 94, left hemisphere 103.7
2609 Male, age 75, right hemisphere 102.4
2243 Female, age 91, right hemisphere 102.3
1955 Male, age 76, both hemispheres 90.4
2110 Male, age 80, left hemisphere 77.3
Central amygdala
nTPM: 97.8
2826 Female, age 94, left hemisphere 134.3
2239 Male, age 80, left hemisphere 96.5
2701 Female, age 91, right hemisphere 94.8
1905 Male, age 76, both hemispheres 86.2
2515 Male, age 75, right hemisphere 77.4
Corticomedial amygdala
nTPM: 85.9
2535 Female, age 67, right hemisphere 108.0
2242 Female, age 91, right hemisphere 99.0
2829 Male, age 80, left hemisphere 95.0
2240 Male, age 76, both hemispheres 74.9
2428 Male, age 75, right hemisphere 70.0
2429 Female, age 94, left hemisphere 68.8
Lateral amygdala
nTPM: 91.8
2830 Female, age 67, right hemisphere 107.6
2534 Female, age 94, left hemisphere 99.9
2255 Female, age 91, right hemisphere 90.7
1883 Male, age 76, both hemispheres 89.5
2256 Male, age 80, left hemisphere 83.9
2516 Male, age 75, right hemisphere 79.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 41.4
Samples: 152

Max nTPM: 107.4
Min nTPM: 9.8
Std nTPM: 12.7
Median nTPM: 39.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 83.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 78.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 72.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 69.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 65.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 63.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 58.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 57.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 56.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 56.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 56.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 56.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 55.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 55.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 55.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 54.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 54.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 53.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 53.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 52.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 52.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 52.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 52.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 52.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 51.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 50.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 50.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 50.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 49.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 49.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 49.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 49.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 48.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 48.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 47.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 47.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 47.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 47.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 46.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 46.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 46.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 46.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 46.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 46.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 46.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 45.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 45.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 44.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 43.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 43.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 43.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 43.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 43.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 43.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 43.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 43.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 43.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 42.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 42.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 42.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 41.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 40.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 40.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 40.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 40.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 39.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 39.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 39.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 39.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 39.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 39.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 39.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 38.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 38.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 38.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 38.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 37.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 37.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 37.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 37.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 37.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 37.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 36.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 36.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 36.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 35.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 35.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 35.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 35.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 34.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 34.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 34.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 34.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 34.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 34.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 33.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 33.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 33.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 33.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 33.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 32.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 32.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 32.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 32.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 32.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 31.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 31.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 31.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 31.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 31.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 30.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 30.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 30.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 30.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 29.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 29.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 29.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 29.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 29.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 28.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 28.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 28.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 28.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 27.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 27.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 27.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 26.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 25.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 24.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 23.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 22.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 22.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 20.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 18.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 17.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 204.9
FF:10151-102I7 76 years, female 204.9

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