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COX6B1
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  • COX6B1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:296.3 nTPM
FANTOM5:258.3 Scaled Tags Per Million
Pig:422.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004192
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 296.3
Samples: 246

Max nTPM: 633.9
Min nTPM: 167.3
Std nTPM: 76.3
Median nTPM: 282.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 633.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 603.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 584.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 573.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 557.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 520.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 506.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 500.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 483.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 444.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 436.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 424.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 424.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 420.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 419.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 415.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 414.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 412.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 409.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 406.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 404.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 404.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 404.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 400.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 392.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 391.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 387.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 387.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 385.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 385.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 377.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 375.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 374.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 373.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 366.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 365.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 363.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 362.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 362.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 362.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 361.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 353.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 350.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 350.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 348.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 346.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 345.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 344.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 342.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 342.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 341.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 340.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 340.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 339.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 338.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 337.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 337.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 335.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 330.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 330.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 329.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 325.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 324.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 321.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 319.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 319.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 319.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 317.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 315.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 315.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 314.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 313.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 313.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 312.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 311.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 310.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 309.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 309.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 308.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 308.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 308.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 307.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 306.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 306.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 304.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 304.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 302.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 301.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 299.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 299.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 297.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 297.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 296.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 295.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 295.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 294.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 294.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 293.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 293.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 293.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 292.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 292.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 292.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 291.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 290.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 290.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 290.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 289.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 289.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 288.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 288.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 288.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 288.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 287.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 287.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 287.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 287.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 287.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 286.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 285.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 285.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 283.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 283.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 282.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 281.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 281.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 281.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 280.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 280.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 280.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 280.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 279.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 279.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 279.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 278.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 278.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 277.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 277.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 276.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 276.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 275.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 274.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 274.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 274.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 273.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 271.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 270.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 270.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 269.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 269.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 269.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 269.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 268.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 268.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 268.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 267.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 267.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 265.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 265.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 263.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 263.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 261.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 261.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 261.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 261.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 260.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 260.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 257.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 257.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 256.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 256.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 255.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 253.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 252.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 252.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 252.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 251.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 251.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 249.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 249.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 248.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 248.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 248.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 248.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 245.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 243.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 243.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 242.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 241.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 239.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 239.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 238.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 238.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 238.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 237.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 237.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 235.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 235.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 234.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 234.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 234.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 234.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 233.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 233.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 230.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 230.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 230.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 229.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 229.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 227.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 226.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 226.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 225.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 223.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 222.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 221.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 219.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 219.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 218.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 217.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 217.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 217.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 215.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 214.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 213.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 211.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 210.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 209.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 208.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 208.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 206.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 204.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 203.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 202.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 202.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 200.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 200.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 198.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 196.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 188.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 186.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 183.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 178.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 173.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 167.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

258.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 258.3
FF:10164-103B2 76 years, female 258.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

422.6
Pig sample Sample description nTPM
Caudate
nTPM: 422.6
Samples: 4

Max nTPM: 532.7
Min nTPM: 329.4
Sample A Female 329.4
Sample B Female 430.6
Sample C Male 532.7
Sample D Male 397.8

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