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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:262.5 nTPM
HPA Brain:264.9 nTPM
GTEx:262.5 nTPM
FANTOM5:426.0 Scaled Tags Per Million
Pig:164.7 nTPM
Mouse:817.6 nTPM
Allen mouse:1.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.9
Sample id Sample description nTPM
Amygdala
nTPM: 227.9
2695 Female, age 67, right hemisphere 265.4
2517 Female, age 94, left hemisphere 251.5
1987 Female, age 91, left hemisphere 245.4
2514 Male, age 75, right hemisphere 225.9
2814 Male, age 76, right hemisphere 151.4
Basal amygdala
nTPM: 264.9
2609 Male, age 75, right hemisphere 324.8
2685 Female, age 94, left hemisphere 287.5
2827 Female, age 67, right hemisphere 265.6
2110 Male, age 80, left hemisphere 260.8
2243 Female, age 91, right hemisphere 259.3
1955 Male, age 76, both hemispheres 191.5
Central amygdala
nTPM: 243.3
2826 Female, age 94, left hemisphere 300.3
2515 Male, age 75, right hemisphere 293.5
2701 Female, age 91, right hemisphere 240.6
2239 Male, age 80, left hemisphere 239.2
1905 Male, age 76, both hemispheres 142.7
Corticomedial amygdala
nTPM: 249.7
2829 Male, age 80, left hemisphere 306.5
2535 Female, age 67, right hemisphere 272.7
2428 Male, age 75, right hemisphere 271.6
2242 Female, age 91, right hemisphere 230.9
2429 Female, age 94, left hemisphere 222.6
2240 Male, age 76, both hemispheres 193.8
Lateral amygdala
nTPM: 249.5
2516 Male, age 75, right hemisphere 282.5
2534 Female, age 94, left hemisphere 262.7
2830 Female, age 67, right hemisphere 262.1
2255 Female, age 91, right hemisphere 257.8
2256 Male, age 80, left hemisphere 253.8
1883 Male, age 76, both hemispheres 177.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 262.5
Samples: 152

Max nTPM: 529.7
Min nTPM: 21.8
Std nTPM: 71.9
Median nTPM: 254.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 529.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 521.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 444.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 402.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 390.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 390.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 386.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 385.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 382.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 373.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 372.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 358.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 354.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 352.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 351.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 346.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 342.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 341.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 340.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 338.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 337.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 337.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 335.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 335.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 333.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 331.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 331.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 329.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 327.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 326.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 321.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 320.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 313.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 306.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 302.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 301.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 301.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 300.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 298.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 298.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 298.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 295.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 294.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 293.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 290.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 289.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 288.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 287.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 286.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 286.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 285.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 284.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 283.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 283.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 278.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 277.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 277.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 277.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 277.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 275.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 275.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 274.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 273.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 271.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 271.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 267.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 266.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 265.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 264.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 261.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 258.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 258.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 257.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 257.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 256.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 254.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 253.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 253.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 253.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 253.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 253.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 252.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 252.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 251.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 251.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 249.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 249.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 247.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 246.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 246.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 245.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 242.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 242.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 241.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 240.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 239.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 239.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 237.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 236.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 235.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 235.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 233.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 232.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 232.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 231.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 230.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 230.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 227.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 226.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 223.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 222.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 221.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 219.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 216.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 216.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 214.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 211.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 210.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 207.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 205.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 203.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 202.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 201.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 197.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 197.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 195.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 194.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 193.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 193.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 193.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 192.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 188.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 188.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 186.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 184.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 184.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 182.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 179.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 177.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 177.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 172.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 160.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 157.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 141.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 131.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 129.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 120.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

426.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 426.0
FF:10151-102I7 76 years, female 426.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.7
Pig sample Sample description nTPM
Amygdala
nTPM: 164.7
Samples: 4

Max nTPM: 220.9
Min nTPM: 129.3
Sample A Female 220.9
Sample B Female 129.3
Sample C Male 152.8
Sample D Male 155.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

817.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 817.7
Samples: 4

Max nTPM: 855.4
Min nTPM: 760.5
Sample A Male 831.3
Sample B Male 855.4
Sample C Female 760.5
Sample D Female 823.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.6
79904620 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 1.6
79912542 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 1.5

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