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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:336.0 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:70.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037915Antibody HPA037916Antibody CAB008661
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumMedium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 336.0
Samples: 246

Max nTPM: 750.5
Min nTPM: 154.2
Std nTPM: 91.0
Median nTPM: 318.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 750.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 724.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 709.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 648.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 591.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 589.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 562.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 544.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 542.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 535.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 519.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 518.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 505.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 496.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 480.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 477.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 474.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 469.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 469.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 467.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 452.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 452.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 444.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 442.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 440.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 438.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 436.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 433.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 433.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 431.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 430.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 426.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 421.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 420.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 420.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 420.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 418.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 417.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 413.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 411.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 408.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 408.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 408.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 407.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 406.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 404.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 404.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 399.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 398.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 395.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 395.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 394.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 392.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 388.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 388.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 385.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 384.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 380.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 380.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 377.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 377.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 375.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 374.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 373.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 364.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 364.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 363.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 362.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 362.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 361.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 359.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 358.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 358.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 357.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 355.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 355.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 355.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 354.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 351.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 349.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 349.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 348.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 348.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 347.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 346.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 344.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 343.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 343.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 340.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 340.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 339.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 338.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 337.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 337.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 335.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 334.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 331.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 330.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 330.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 329.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 329.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 328.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 327.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 327.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 327.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 327.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 325.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 324.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 324.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 323.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 323.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 323.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 323.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 323.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 323.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 322.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 321.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 320.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 320.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 320.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 320.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 319.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 319.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 318.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 318.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 316.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 316.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 315.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 315.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 314.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 314.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 314.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 314.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 314.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 313.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 313.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 313.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 313.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 311.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 311.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 310.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 310.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 309.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 309.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 308.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 308.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 307.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 306.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 306.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 305.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 305.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 304.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 304.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 303.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 303.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 302.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 302.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 302.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 301.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 301.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 300.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 299.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 298.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 298.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 298.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 297.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 296.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 295.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 295.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 295.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 294.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 292.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 290.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 290.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 290.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 290.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 289.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 288.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 288.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 285.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 284.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 283.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 283.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 282.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 281.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 281.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 281.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 280.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 280.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 279.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 277.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 276.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 275.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 274.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 274.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 274.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 273.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 272.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 272.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 268.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 268.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 268.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 267.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 264.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 264.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 263.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 263.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 262.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 261.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 260.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 258.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 258.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 257.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 254.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 253.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 252.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 248.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 247.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 246.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 244.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 244.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 244.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 243.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 239.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 238.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 235.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 233.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 233.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 231.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 229.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 223.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 222.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 219.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 211.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 207.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 207.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 204.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 204.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 203.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 198.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 188.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 179.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 179.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 179.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 171.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 154.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 167.4
FF:10164-103B2 76 years, female 167.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.9
Pig sample Sample description nTPM
Caudate
nTPM: 70.9
Samples: 4

Max nTPM: 75.7
Min nTPM: 59.3
Sample A Female 74.2
Sample B Female 74.4
Sample C Male 75.7
Sample D Male 59.3

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