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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:269.2 nTPM
HPA Brain:248.6 nTPM
GTEx:269.2 nTPM
FANTOM5:164.9 Scaled Tags Per Million
Pig:114.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 248.6
2565 Male, age 75, midline 302.1
1981 Female, age 72, midline 258.4
2194 Female, age 79, both hemispheres 256.2
2816 Male, age 47, midline 223.5
2048 Male, age 55, midline 202.6
Cervical spinal cord, dorsal horn
nTPM: 196.8
2173 Female, age 72, unknown 249.5
2296 Male, age 66, both hemispheres 199.8
2721 Male, age 90, both hemispheres 194.2
2069 Male, age 47, both hemispheres 192.3
2297 Male, age 75, both hemispheres 173.4
1877 Male, age 55, unknown 171.8
Cervical spinal cord, ventral horn
nTPM: 206.7
2068 Male, age 55, unknown 238.3
2820 Female, age 79, both hemispheres 226.8
2098 Female, age 72, unknown 212.2
2809 Male, age 90, both hemispheres 199.0
2480 Male, age 75, both hemispheres 191.3
2295 Male, age 66, both hemispheres 172.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 269.2
Samples: 159

Max nTPM: 448.4
Min nTPM: 125.6
Std nTPM: 62.4
Median nTPM: 263.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 448.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 444.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 441.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 439.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 407.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 405.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 398.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 385.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 385.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 378.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 377.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 371.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 369.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 359.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 348.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 348.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 348.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 344.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 342.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 341.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 335.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 335.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 333.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 333.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 331.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 331.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 329.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 328.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 325.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 322.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 316.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 316.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 315.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 313.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 308.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 306.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 305.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 305.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 304.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 303.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 303.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 302.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 299.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 298.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 296.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 294.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 293.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 293.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 293.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 292.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 292.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 290.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 288.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 287.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 287.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 287.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 287.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 285.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 283.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 282.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 281.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 280.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 278.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 278.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 277.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 276.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 276.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 275.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 274.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 273.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 273.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 271.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 270.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 270.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 270.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 266.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 265.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 265.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 264.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 263.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 261.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 260.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 259.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 258.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 257.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 256.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 256.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 255.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 253.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 252.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 251.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 251.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 249.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 248.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 247.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 247.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 246.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 244.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 242.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 241.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 240.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 239.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 238.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 237.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 237.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 236.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 236.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 236.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 235.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 235.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 234.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 234.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 234.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 233.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 232.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 230.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 230.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 230.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 229.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 229.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 228.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 228.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 227.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 227.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 226.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 223.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 220.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 220.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 218.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 214.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 213.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 213.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 211.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 211.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 211.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 210.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 206.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 206.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 203.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 199.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 197.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 197.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 197.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 195.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 195.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 194.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 193.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 190.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 187.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 178.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 176.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 172.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 165.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 160.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 153.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 148.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 125.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 164.9
FF:10181-103D1 60 years, female 228.7
FF:10159-103A6 76 years, female 101.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 96.9
Samples: 4

Max nTPM: 136.7
Min nTPM: 73.7
Sample A Female 136.7
Sample B Female 73.7
Sample C Male 84.7
Sample D Male 92.5
Ventral spinal cord
nTPM: 114.2
Samples: 4

Max nTPM: 124.9
Min nTPM: 95.5
Sample A Female 124.9
Sample B Female 122.6
Sample C Male 113.7
Sample D Male 95.5

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