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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.5 nTPM
HPA Brain:64.0 nTPM
GTEx:37.5 nTPM
FANTOM5:130.0 Scaled Tags Per Million
Pig:21.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 57.0
2048 Male, age 55, midline 62.0
2816 Male, age 47, midline 61.1
2194 Female, age 79, both hemispheres 60.2
2565 Male, age 75, midline 54.2
1981 Female, age 72, midline 47.4
Cervical spinal cord, dorsal horn
nTPM: 50.1
2296 Male, age 66, both hemispheres 54.3
1877 Male, age 55, unknown 53.0
2173 Female, age 72, unknown 51.2
2069 Male, age 47, both hemispheres 47.9
2297 Male, age 75, both hemispheres 47.2
2721 Male, age 90, both hemispheres 46.8
Cervical spinal cord, ventral horn
nTPM: 64.0
2820 Female, age 79, both hemispheres 71.5
2809 Male, age 90, both hemispheres 69.2
2480 Male, age 75, both hemispheres 65.1
2295 Male, age 66, both hemispheres 63.0
2068 Male, age 55, unknown 61.2
2098 Female, age 72, unknown 54.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 37.5
Samples: 159

Max nTPM: 110.1
Min nTPM: 15.9
Std nTPM: 15.5
Median nTPM: 33.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 110.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 91.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 91.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 79.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 77.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 75.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 72.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 70.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 70.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 64.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 63.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 61.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 61.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 61.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 60.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 57.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 54.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 54.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 53.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 52.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 52.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 51.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 50.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 50.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 50.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 49.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 48.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 46.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 46.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 45.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 45.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 45.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 44.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 44.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 44.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 43.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 42.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 42.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 41.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 41.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 41.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 40.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 40.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 40.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 40.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 40.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 40.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 40.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 39.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 39.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 39.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 39.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 39.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 39.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 38.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 38.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 38.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 38.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 38.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 38.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 38.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 37.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 36.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 36.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 36.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 36.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 35.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 35.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 35.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 34.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 34.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 34.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 34.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 34.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 34.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 33.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 33.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 32.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 32.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 32.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 32.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 32.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 31.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 31.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 31.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 31.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 31.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 31.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 31.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 31.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 30.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 30.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 30.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 30.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 30.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 30.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 30.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 30.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 29.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 29.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 29.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 29.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 29.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 28.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 28.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 28.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 28.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 28.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 28.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 27.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 27.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 27.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 27.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 27.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 27.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 26.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 26.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 26.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 26.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 26.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 26.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 26.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 26.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 25.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 25.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 25.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 25.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 25.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 25.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 24.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 24.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 24.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 24.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 24.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 24.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 23.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 23.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 23.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 23.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 23.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 22.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 22.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 22.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 22.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 21.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 21.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 21.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 21.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 20.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 20.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 19.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 19.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 19.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 18.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 18.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 15.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 130.0
FF:10159-103A6 76 years, female 153.4
FF:10181-103D1 60 years, female 106.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 21.1
Samples: 4

Max nTPM: 22.2
Min nTPM: 19.1
Sample A Female 21.3
Sample B Female 21.6
Sample C Male 22.2
Sample D Male 19.1
Ventral spinal cord
nTPM: 20.3
Samples: 4

Max nTPM: 27.0
Min nTPM: 17.0
Sample A Female 27.0
Sample B Female 17.4
Sample C Male 17.0
Sample D Male 19.7

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