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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:108.8 nTPM
HPA Brain:47.5 nTPM
GTEx:108.8 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:14.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 39.2
1981 Female, age 72, midline 51.8
2565 Male, age 75, midline 43.8
2048 Male, age 55, midline 37.3
2816 Male, age 47, midline 34.3
2194 Female, age 79, both hemispheres 28.8
Cervical spinal cord, dorsal horn
nTPM: 42.9
2296 Male, age 66, both hemispheres 59.2
2173 Female, age 72, unknown 55.1
2069 Male, age 47, both hemispheres 50.1
1877 Male, age 55, unknown 39.9
2297 Male, age 75, both hemispheres 27.5
2721 Male, age 90, both hemispheres 25.7
Cervical spinal cord, ventral horn
nTPM: 47.5
2098 Female, age 72, unknown 68.9
2809 Male, age 90, both hemispheres 57.2
2480 Male, age 75, both hemispheres 55.8
2295 Male, age 66, both hemispheres 36.8
2068 Male, age 55, unknown 36.1
2820 Female, age 79, both hemispheres 30.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 108.8
Samples: 159

Max nTPM: 187.7
Min nTPM: 40.3
Std nTPM: 28.5
Median nTPM: 107.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 187.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 180.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 178.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 172.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 170.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 168.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 167.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 165.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 163.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 163.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 149.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 148.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 148.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 147.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 145.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 145.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 144.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 144.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 141.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 141.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 141.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 139.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 137.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 137.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 136.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 135.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 134.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 134.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 132.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 132.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 132.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 130.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 130.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 130.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 130.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 130.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 130.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 129.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 129.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 127.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 125.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 125.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 125.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 125.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 123.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 122.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 121.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 121.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 121.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 121.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 121.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 121.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 120.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 119.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 119.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 119.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 118.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 118.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 118.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 117.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 117.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 116.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 116.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 116.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 116.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 115.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 114.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 113.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 113.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 112.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 111.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 111.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 109.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 108.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 108.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 107.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 107.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 105.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 104.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 104.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 104.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 104.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 103.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 102.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 101.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 101.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 100.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 100.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 100.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 99.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 98.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 97.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 96.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 96.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 96.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 96.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 94.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 94.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 94.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 94.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 94.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 93.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 93.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 93.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 92.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 90.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 90.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 89.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 89.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 89.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 89.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 89.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 89.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 88.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 88.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 87.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 87.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 86.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 84.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 83.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 83.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 83.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 81.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 80.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 80.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 79.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 78.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 77.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 77.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 77.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 73.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 73.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 72.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 71.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 71.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 70.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 69.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 69.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 68.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 67.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 67.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 58.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 52.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 51.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 40.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.1
FF:10181-103D1 60 years, female 33.0
FF:10159-103A6 76 years, female 19.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 14.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 13.9
Sample C Male 17.6
Sample D Male 12.2
Ventral spinal cord
nTPM: 14.1
Samples: 4

Max nTPM: 14.9
Min nTPM: 13.4
Sample A Female 13.9
Sample B Female 14.9
Sample C Male 14.2
Sample D Male 13.4

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