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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:654.1 nTPM
HPA Brain:192.6 nTPM
GTEx:654.1 nTPM
FANTOM5:271.8 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:811.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.6
Sample id Sample description nTPM
Amygdala
nTPM: 192.6
2814 Male, age 76, right hemisphere 226.0
2514 Male, age 75, right hemisphere 199.7
2695 Female, age 67, right hemisphere 198.7
1987 Female, age 91, left hemisphere 172.5
2517 Female, age 94, left hemisphere 166.1
Basal amygdala
nTPM: 146.3
2110 Male, age 80, left hemisphere 170.8
2609 Male, age 75, right hemisphere 164.9
1955 Male, age 76, both hemispheres 152.5
2243 Female, age 91, right hemisphere 139.1
2685 Female, age 94, left hemisphere 133.7
2827 Female, age 67, right hemisphere 116.7
Central amygdala
nTPM: 172.1
1905 Male, age 76, both hemispheres 204.4
2826 Female, age 94, left hemisphere 193.6
2515 Male, age 75, right hemisphere 183.3
2239 Male, age 80, left hemisphere 151.5
2701 Female, age 91, right hemisphere 127.7
Corticomedial amygdala
nTPM: 157.9
2829 Male, age 80, left hemisphere 193.3
2429 Female, age 94, left hemisphere 182.4
2428 Male, age 75, right hemisphere 181.5
2240 Male, age 76, both hemispheres 148.8
2242 Female, age 91, right hemisphere 142.0
2535 Female, age 67, right hemisphere 99.6
Lateral amygdala
nTPM: 153.3
2516 Male, age 75, right hemisphere 217.8
1883 Male, age 76, both hemispheres 198.7
2534 Female, age 94, left hemisphere 153.5
2830 Female, age 67, right hemisphere 132.3
2255 Female, age 91, right hemisphere 108.9
2256 Male, age 80, left hemisphere 108.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

654.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 654.1
Samples: 152

Max nTPM: 2298.0
Min nTPM: 236.6
Std nTPM: 262.1
Median nTPM: 594.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2298.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1636.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1583.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1551.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1327.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1281.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1280.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1152.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1047.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1030.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1023.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 968.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 955.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 911.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 910.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 899.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 849.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 842.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 841.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 836.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 832.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 826.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 819.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 814.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 804.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 799.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 791.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 765.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 761.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 759.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 758.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 750.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 748.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 743.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 743.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 734.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 734.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 733.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 733.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 715.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 709.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 706.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 704.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 702.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 702.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 697.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 682.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 681.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 681.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 680.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 679.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 669.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 667.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 664.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 662.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 659.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 657.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 654.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 651.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 646.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 645.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 640.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 632.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 632.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 630.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 630.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 629.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 625.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 620.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 613.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 612.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 610.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 608.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 606.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 598.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 597.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 591.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 583.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 581.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 581.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 576.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 575.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 569.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 567.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 563.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 562.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 558.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 555.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 553.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 550.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 549.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 547.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 545.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 545.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 540.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 540.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 538.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 524.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 521.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 521.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 521.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 518.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 516.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 516.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 515.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 513.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 513.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 510.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 510.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 510.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 505.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 504.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 504.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 503.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 502.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 501.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 499.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 498.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 491.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 488.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 486.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 485.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 485.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 483.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 480.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 480.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 478.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 477.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 472.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 471.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 470.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 465.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 463.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 462.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 461.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 455.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 453.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 441.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 434.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 425.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 424.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 424.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 418.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 418.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 402.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 397.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 394.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 383.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 368.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 338.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 305.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 236.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

271.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 271.8
FF:10151-102I7 76 years, female 271.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
Pig sample Sample description nTPM
Amygdala
nTPM: 66.8
Samples: 4

Max nTPM: 83.5
Min nTPM: 52.2
Sample A Female 83.5
Sample B Female 72.3
Sample C Male 59.3
Sample D Male 52.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

811.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 811.9
Samples: 4

Max nTPM: 927.7
Min nTPM: 713.6
Sample A Male 713.6
Sample B Male 806.5
Sample C Female 927.7
Sample D Female 799.9

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