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ATP13A4
HPA
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  • ATP13A4
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ATP13A4
Synonyms DKFZp761I1011, FLJ37958
Gene descriptioni

Full gene name according to HGNC.

ATPase 13A4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband q29
Chromosome location (bp) 193398967 - 193593111
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000127249 (version 109)
Entrez gene 84239
HGNC HGNC:25422
UniProt Q4VNC1 (UniProt - Evidence at transcript level)
neXtProt NX_Q4VNC1
GeneCards ATP13A4
Antibodypedia ATP13A4 antibodies


PROTEIN FUNCTION
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Translocase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Magnesium, Metal-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable ATPase-coupled cation transmembrane transporter activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to be located in endoplasmic reticulum membrane and endosome membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ATP13A4-201
ENSP00000295548
ENST00000295548
Q4VNC1
[Direct mapping] Probable cation-transporting ATPase 13A4
Show all
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005215 [transporter activity]
GO:0005524 [ATP binding]
GO:0005768 [endosome]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006812 [cation transport]
GO:0006874 [cellular calcium ion homeostasis]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0019829 [ATPase-coupled cation transmembrane transporter activity]
GO:0031901 [early endosome membrane]
GO:0031902 [late endosome membrane]
GO:0034220 [ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0055038 [recycling endosome membrane]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
GO:0140358 [P-type transmembrane transporter activity]
Show all
576 aa
64.6 kDa
No 5
ATP13A4-202
ENSP00000339182
ENST00000342695
Q4VNC1
[Direct mapping] Probable cation-transporting ATPase 13A4
Show all
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005215 [transporter activity]
GO:0005524 [ATP binding]
GO:0005768 [endosome]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006812 [cation transport]
GO:0006874 [cellular calcium ion homeostasis]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0019829 [ATPase-coupled cation transmembrane transporter activity]
GO:0031901 [early endosome membrane]
GO:0031902 [late endosome membrane]
GO:0034220 [ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0055038 [recycling endosome membrane]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
GO:0140358 [P-type transmembrane transporter activity]
Show all
1196 aa
134 kDa
No >9
ATP13A4-203
ENSP00000376238
ENST00000392443
B7WPN9
[Direct mapping] Cation-transporting ATPase
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005215 [transporter activity]
GO:0005524 [ATP binding]
GO:0006812 [cation transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0019829 [ATPase-coupled cation transmembrane transporter activity]
GO:0034220 [ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0098655 [cation transmembrane transport]
GO:0140358 [P-type transmembrane transporter activity]
Show all
1177 aa
132 kDa
No >9
ATP13A4-204
ENSP00000383129
ENST00000400270
Q4VNC1
[Direct mapping] Probable cation-transporting ATPase 13A4
Show all
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Disease related genes
Potential drug targets
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0000166 [nucleotide binding]
GO:0005524 [ATP binding]
GO:0005768 [endosome]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006812 [cation transport]
GO:0006874 [cellular calcium ion homeostasis]
GO:0016020 [membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0019829 [ATPase-coupled cation transmembrane transporter activity]
GO:0031901 [early endosome membrane]
GO:0031902 [late endosome membrane]
GO:0034220 [ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0055038 [recycling endosome membrane]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
GO:0140358 [P-type transmembrane transporter activity]
Show all
212 aa
24.3 kDa
No 3

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