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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:162.1 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:211.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB004528Antibody CAB009326
Glial cells Not detectedNot detected
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 162.1
Samples: 246

Max nTPM: 370.1
Min nTPM: 61.7
Std nTPM: 54.6
Median nTPM: 154.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 370.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 362.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 356.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 335.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 331.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 303.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 289.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 276.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 275.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 268.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 260.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 260.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 255.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 255.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 252.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 249.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 248.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 245.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 243.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 242.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 237.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 236.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 233.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 232.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 232.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 232.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 231.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 231.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 229.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 226.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 226.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 220.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 219.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 217.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 215.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 213.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 213.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 212.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 209.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 208.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 207.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 207.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 206.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 205.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 204.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 204.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 203.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 201.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 200.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 200.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 199.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 199.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 199.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 199.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 196.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 196.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 196.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 196.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 196.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 196.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 195.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 195.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 193.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 192.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 191.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 191.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 188.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 187.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 185.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 184.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 184.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 184.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 184.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 183.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 183.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 182.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 181.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 181.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 180.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 180.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 179.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 177.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 176.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 176.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 175.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 175.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 174.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 174.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 174.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 174.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 173.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 172.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 171.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 171.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 171.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 170.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 169.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 169.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 168.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 167.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 166.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 165.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 165.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 164.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 163.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 163.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 162.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 162.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 162.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 161.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 160.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 159.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 157.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 157.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 157.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 156.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 155.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 155.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 155.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 155.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 155.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 155.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 154.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 154.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 153.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 153.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 153.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 153.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 152.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 152.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 151.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 151.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 151.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 151.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 150.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 150.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 150.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 149.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 149.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 149.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 148.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 148.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 148.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 147.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 146.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 145.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 145.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 144.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 142.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 140.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 140.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 138.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 137.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 137.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 137.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 137.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 136.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 136.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 136.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 134.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 134.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 133.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 133.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 133.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 133.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 133.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 132.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 131.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 130.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 129.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 128.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 127.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 127.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 127.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 126.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 125.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 125.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 125.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 124.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 123.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 123.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 123.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 121.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 121.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 120.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 120.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 119.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 118.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 117.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 117.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 116.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 116.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 116.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 115.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 114.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 114.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 113.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 112.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 112.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 112.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 111.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 111.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 111.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 110.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 110.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 109.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 109.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 108.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 108.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 106.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 104.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 103.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 103.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 103.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 102.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 101.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 99.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 97.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 96.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 95.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 95.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 93.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 93.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 92.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 91.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 90.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 89.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 88.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 86.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 85.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 82.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 82.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 81.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 79.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 78.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 75.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 73.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 72.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 66.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 61.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.2
FF:10164-103B2 76 years, female 114.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.0
Pig sample Sample description nTPM
Caudate
nTPM: 211.0
Samples: 4

Max nTPM: 253.8
Min nTPM: 173.9
Sample A Female 173.9
Sample B Female 226.4
Sample C Male 253.8
Sample D Male 189.9

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