MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:174.6 nTPM
HPA Brain:147.3 nTPM
GTEx:174.6 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:179.1 nTPM
Mouse:16.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 147.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.8
2586 Male, age 75, left hemisphere 143.6
2219 Male, age 76, both hemispheres 133.4
2411 Female, age 72, unknown 125.5
1827 Male, age 72, unknown 118.3
2019 Male, age 18, unknown 112.3
2666 Male, age 74, left hemisphere 105.7
1870 Female, age 42, unknown 103.7
2828 Female, age 72, unknown 103.4
1833 Male, age 53, unknown 94.4
1830 Male, age 51, unknown 87.9
Dorsal raphe nucleus
nTPM: 125.0
2298 Female, age 72, unknown 147.9
2047 Male, age 72, unknown 142.5
1828 Male, age 53, unknown 134.5
2750 Male, age 76, both hemispheres 117.5
2016 Female, age 72, unknown 82.6
Inferior colliculus
nTPM: 109.8
2097 Female, age 72, unknown 115.5
1890 Male, age 53, unknown 112.3
1848 Female, age 42, unknown 106.9
2849 Male, age 72, unknown 104.6
Median raphe nucleus
nTPM: 133.9
2220 Male, age 76, midline 133.9
Periaquaductal grey, anterior
nTPM: 134.9
1795 Male, age 51, unknown 140.7
1947 Male, age 18, unknown 138.0
2502 Female, age 75, unknown 126.1
Periaquaductal grey, dorsal
nTPM: 89.7
1840 Male, age 53, unknown 98.3
2850 Male, age 76, both hemispheres 89.2
2464 Female, age 72, unknown 88.8
1831 Male, age 72, unknown 82.6
Periaquaductal grey, lateral
nTPM: 78.1
2053 Male, age 18, unknown 81.5
2140 Male, age 76, both hemispheres 77.8
2272 Male, age 74, both hemispheres 75.2
Pretectal area
nTPM: 115.6
2007 Male, age 72, unknown 153.6
1816 Male, age 51, unknown 153.2
1944 Female, age 72, unknown 152.0
1817 Female, age 42, unknown 145.3
2667 Female, age 75, unknown 120.7
1815 Male, age 53, unknown 112.2
2224 Female, age 72, unknown 103.6
2825 Male, age 18, unknown 97.6
2407 Male, age 75, both hemispheres 86.2
2273 Male, age 74, both hemispheres 73.7
2316 Male, age 76, right hemisphere 73.4
Red nucleus
nTPM: 107.5
1821 Female, age 72, unknown 125.0
2769 Male, age 72, unknown 116.8
2785 Male, age 18, unknown 113.7
2725 Female, age 75, unknown 112.8
2227 Male, age 72, unknown 110.5
2588 Male, age 74, left hemisphere 109.5
2584 Male, age 75, left hemisphere 107.1
1954 Female, age 42, unknown 105.8
2503 Female, age 72, unknown 104.2
1865 Male, age 51, unknown 99.6
1904 Male, age 53, unknown 96.5
2823 Male, age 76, right hemisphere 88.9
Substantia nigra
nTPM: 147.3
1916 Female, age 42, unknown 224.5
1941 Male, age 53, unknown 185.5
2665 Male, age 74, both hemispheres 170.5
1851 Male, age 51, unknown 169.3
1889 Female, age 72, unknown 148.4
2241 Male, age 72, unknown 122.6
2699 Male, age 18, unknown 121.3
2409 Female, age 72, unknown 120.7
2583 Male, age 75, right hemisphere 112.6
2590 Female, age 75, unknown 97.3
Superior colliculus
nTPM: 110.6
2668 Female, age 75, unknown 149.3
2087 Female, age 72, unknown 132.0
2261 Male, age 18, unknown 127.9
1796 Male, age 53, unknown 127.3
2664 Male, age 75, both hemispheres 109.2
1895 Male, age 76, right hemisphere 106.8
2587 Male, age 74, left hemisphere 97.8
1839 Male, age 51, unknown 94.4
1913 Female, age 42, unknown 86.0
1995 Male, age 72, unknown 75.1
Ventral tegmental area
nTPM: 135.2
2410 Female, age 72, unknown 167.2
1915 Female, age 42, unknown 162.8
2218 Male, age 76, both hemispheres 159.2
1942 Male, age 51, unknown 121.5
2223 Female, age 72, unknown 109.3
2021 Male, age 53, unknown 91.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 174.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.6
Samples: 139

Max nTPM: 542.3
Min nTPM: 58.0
Std nTPM: 84.3
Median nTPM: 148.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 542.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 461.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 446.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 409.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 375.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 360.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 330.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 305.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 304.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 298.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 296.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.9
FF:10158-103A5 76 years, female 49.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 179.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 156.3
Samples: 4

Max nTPM: 235.0
Min nTPM: 100.1
Sample A Female 235.0
Sample B Female 120.9
Sample C Male 169.1
Sample D Male 100.1
Midbrain
nTPM: 162.2
Samples: 4

Max nTPM: 205.1
Min nTPM: 130.3
Sample A Female 130.3
Sample B Female 148.8
Sample C Male 205.1
Sample D Male 164.6
Periaqueductal gray
nTPM: 112.5
Samples: 3

Max nTPM: 130.6
Min nTPM: 92.7
Sample B Female 114.2
Sample C Male 130.6
Sample D Male 92.7
Superior colliculi
nTPM: 179.1
Samples: 4

Max nTPM: 231.6
Min nTPM: 108.8
Sample A Female 231.6
Sample B Female 108.8
Sample C Male 218.9
Sample D Male 157.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 15.3
Sample A Male 19.1
Sample B Male 15.5
Sample C Female 15.3
Sample D Female 17.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69783196 Antisense, RP_050505_04_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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