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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:374.0 nTPM
FANTOM5:161.6 Scaled Tags Per Million
Pig:131.6 nTPM
Mouse:181.5 nTPM
Allen mouse:5.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 194.4
2497 Male, age 66, unknown 254.6
2032 Female, age 42, unknown 235.6
2396 Male, age 61, right hemisphere 92.9
Centromedial thalamic nucleus
nTPM: 374.0
2279 Female, age 85, left hemisphere 384.6
2401 Male, age 76, right hemisphere 363.4
Habenula
nTPM: 312.6
2276 Male, age 66, unknown 352.3
1957 Male, age 80, both hemispheres 332.9
2203 Male, age 61, left hemisphere 306.9
2252 Male, age 62, unknown 258.3
Lateral geniculate body
nTPM: 208.6
2857 Male, age 74, right hemisphere 335.3
2399 Male, age 61, left hemisphere 278.8
2106 Female, age 67, right hemisphere 273.2
1953 Male, age 62, unknown 237.2
2035 Female, age 72, unknown 195.2
2659 Male, age 66, unknown 186.9
2841 Male, age 80, both hemispheres 94.1
2575 Female, age 94, right hemisphere 68.0
Lateral thalamic nuclei
nTPM: 233.2
1903 Male, age 76, left hemisphere 391.2
2661 Female, age 72, unknown 365.9
2577 Male, age 74, both hemispheres 150.4
2765 Female, age 67, both hemispheres 134.1
2573 Female, age 94, left hemisphere 124.3
Medial dorsal thalamic nucleus
nTPM: 298.0
1859 Male, age 76, both hemispheres 450.2
2283 Male, age 80, right hemisphere 428.9
2498 Male, age 66, unknown 372.3
2026 Male, age 62, unknown 359.2
2492 Male, age 75, right hemisphere 358.5
1810 Male, age 48, unknown 330.6
1971 Male, age 61, right hemisphere 282.1
2576 Male, age 74, both hemispheres 261.6
2660 Female, age 72, unknown 258.7
2402 Female, age 67, both hemispheres 247.0
1930 Female, age 42, unknown 221.8
2572 Female, age 94, right hemisphere 153.3
2039 Female, age 72, unknown 150.2
Medial geniculate body
nTPM: 270.7
2207 Male, age 80, right hemisphere 418.5
1811 Female, age 42, unknown 358.1
2657 Male, age 74, right hemisphere 330.9
2650 Female, age 94, left hemisphere 268.4
2217 Female, age 72, unknown 236.1
2049 Male, age 76, both hemispheres 148.6
2571 Male, age 75, right hemisphere 134.6
Nucleus reuniens
nTPM: 124.0
2212 Female, age 67, left hemisphere 176.7
2205 Male, age 80, left hemisphere 141.0
2210 Female, age 85, left hemisphere 54.5
Nucleus rhomboideus
nTPM: 215.1
2206 Male, age 80, both hemispheres 449.9
2213 Female, age 67, left hemisphere 133.6
2280 Female, age 85, left hemisphere 61.8
Posterior thalamic nucleus
nTPM: 299.3
2266 Male, age 76, right hemisphere 441.9
2655 Male, age 74, right hemisphere 403.4
2495 Female, age 67, right hemisphere 282.5
2649 Female, age 94, both hemispheres 69.3
Pulvinar
nTPM: 316.2
2582 Female, age 72, unknown 423.7
2214 Male, age 76, right hemisphere 372.4
2496 Female, age 67, right hemisphere 344.4
2499 Male, age 66, unknown 331.5
2724 Male, age 74, right hemisphere 325.2
1972 Male, age 62, unknown 290.0
2398 Male, age 61, left hemisphere 281.9
1932 Male, age 80, right hemisphere 272.7
1929 Male, age 48, unknown 269.7
1899 Female, age 42, unknown 250.6
Subthalamic nucleus
nTPM: 98.5
2658 Male, age 74, both hemispheres 131.7
2406 Female, age 72, unknown 123.7
2275 Male, age 66, unknown 108.3
2282 Male, age 61, both hemispheres 105.5
2216 Male, age 48, unknown 97.7
2779 Female, age 42, unknown 90.5
2124 Male, age 62, unknown 65.9
2056 Female, age 72, unknown 64.3
Ventral posterolateral thalamic nucleus
nTPM: 288.2
2197 Male, age 80, both hemispheres 433.2
2740 Male, age 76, right hemisphere 379.1
2581 Female, age 72, unknown 333.9
2397 Male, age 61, right hemisphere 216.1
2578 Male, age 74, both hemispheres 189.8
2570 Male, age 75, right hemisphere 177.1
Ventral posteromedial thalamic nucleus
nTPM: 323.1
2758 Male, age 80, both hemispheres 560.0
2202 Male, age 61, left hemisphere 383.6
2127 Male, age 76, right hemisphere 287.9
2281 Male, age 75, right hemisphere 197.6
2653 Male, age 74, both hemispheres 186.5
Ventral thalamic nuclei
nTPM: 244.3
1860 Male, age 76, both hemispheres 359.8
2285 Male, age 62, unknown 348.1
2204 Male, age 80, both hemispheres 294.3
2858 Female, age 72, unknown 275.0
1912 Female, age 42, unknown 250.9
1845 Male, age 48, unknown 223.5
2580 Male, age 66, unknown 177.2
2652 Male, age 74, left hemisphere 139.0
2291 Female, age 72, unknown 130.9
Zona incerta
nTPM: 158.6
2208 Male, age 80, right hemisphere 359.7
2663 Female, age 72, unknown 208.7
2822 Male, age 74, right hemisphere 102.8
2215 Male, age 66, unknown 64.3
2403 Male, age 62, unknown 57.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 161.6
FF:10154-103A1 76 years, female 161.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

131.6
Pig sample Sample description nTPM
Thalamus
nTPM: 131.6
Samples: 4

Max nTPM: 203.5
Min nTPM: 34.8
Sample A Female 203.5
Sample B Female 120.1
Sample C Male 168.0
Sample D Male 34.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 181.6
Samples: 4

Max nTPM: 255.6
Min nTPM: 123.1
Sample A Male 200.2
Sample B Male 123.1
Sample C Female 255.6
Sample D Female 147.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 5.3
100144433 Antisense, RP_110407_02_C04, Mouse strain C57BL/6J (56 days, male) 5.3

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