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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:20.1 nTPM
HPA Brain:49.1 nTPM
GTEx:20.1 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:109.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 38.5
2194 Female, age 79, both hemispheres 50.2
1981 Female, age 72, midline 44.5
2565 Male, age 75, midline 34.0
2048 Male, age 55, midline 33.6
2816 Male, age 47, midline 30.0
Cervical spinal cord, dorsal horn
nTPM: 49.1
2721 Male, age 90, both hemispheres 87.9
2297 Male, age 75, both hemispheres 69.0
2173 Female, age 72, unknown 54.9
2069 Male, age 47, both hemispheres 34.7
1877 Male, age 55, unknown 33.1
2296 Male, age 66, both hemispheres 15.1
Cervical spinal cord, ventral horn
nTPM: 38.6
2820 Female, age 79, both hemispheres 60.3
2068 Male, age 55, unknown 57.5
2295 Male, age 66, both hemispheres 30.9
2480 Male, age 75, both hemispheres 29.3
2098 Female, age 72, unknown 29.1
2809 Male, age 90, both hemispheres 24.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 20.1
Samples: 159

Max nTPM: 111.0
Min nTPM: 4.4
Std nTPM: 17.5
Median nTPM: 13.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 111.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 82.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 78.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 77.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 70.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 68.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 57.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 52.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 52.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 49.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 48.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 45.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 44.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 44.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 40.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 37.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 35.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 35.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 35.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 34.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 33.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 32.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 32.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 31.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 31.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 30.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 30.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 28.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 28.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 28.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 28.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 27.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 26.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 26.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 26.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 25.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 25.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 25.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 23.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 23.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 21.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 21.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 21.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 21.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 21.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 20.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 20.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 19.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 19.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 19.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 19.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 19.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 18.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 18.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 18.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 17.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 17.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 17.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 17.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 17.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 16.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 16.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 16.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 16.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 16.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 16.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 16.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 16.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 16.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 15.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 14.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 14.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 14.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 14.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 14.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 13.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 13.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 13.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 13.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 13.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 13.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 13.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 13.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 13.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 13.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 13.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 13.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 13.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 12.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 12.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 12.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 12.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 12.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 12.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 11.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 11.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 11.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 11.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 10.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 10.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 10.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 9.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 9.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 9.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 9.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 9.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 9.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 9.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 9.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 9.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 9.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 9.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 9.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 9.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 9.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 9.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 9.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 9.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 8.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 8.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 8.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 8.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 8.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 8.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 8.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 7.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 7.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 7.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 7.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 7.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 7.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 7.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 7.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 6.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 6.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 6.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 6.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 6.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 6.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 6.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 6.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 6.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 6.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 6.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 6.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 5.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 4.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 4.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 4.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 61.1
FF:10181-103D1 60 years, female 87.7
FF:10159-103A6 76 years, female 34.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 64.6
Samples: 4

Max nTPM: 102.5
Min nTPM: 28.5
Sample A Female 102.5
Sample B Female 38.4
Sample C Male 28.5
Sample D Male 88.8
Ventral spinal cord
nTPM: 109.2
Samples: 4

Max nTPM: 133.8
Min nTPM: 60.7
Sample A Female 133.8
Sample B Female 118.6
Sample C Male 123.7
Sample D Male 60.7

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