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PNKD
HPA
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  • PNKD
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PNKD
Synonyms BRP17, DKFZp564N1362, DYT8, FKSG19, FPD1, KIAA1184, KIPP1184, MGC31943, MR-1, MR-1S, PDC, PKND1, TAHCCP2
Gene descriptioni

Full gene name according to HGNC.

PNKD metallo-beta-lactamase domain containing
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q35
Chromosome location (bp) 218269651 - 218346793
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000127838 (version 109)
Entrez gene 25953
HGNC HGNC:9153
UniProt Q8N490 (UniProt - Evidence at protein level)
neXtProt NX_Q8N490
GeneCards PNKD
Antibodypedia PNKD antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Probable hydrolase that plays an aggravative role in the development of cardiac hypertrophy via activation of the NF-kappa-B signaling pathway.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene is thought to play a role in the regulation of myofibrillogenesis. Mutations in this gene have been associated with the movement disorder paroxysmal non-kinesigenic dyskinesia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PNKD-201
ENSP00000248451
ENST00000248451
Q8N490
[Direct mapping] Probable hydrolase PNKD
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
   Phobius predicted secreted proteins
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004416 [hydroxyacylglutathione hydrolase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0046872 [metal ion binding]
GO:0046929 [negative regulation of neurotransmitter secretion]
Show all
142 aa
15.4 kDa
No 2
PNKD-202
ENSP00000258362
ENST00000258362
Q8N490
[Direct mapping] Probable hydrolase PNKD
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004416 [hydroxyacylglutathione hydrolase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0046872 [metal ion binding]
GO:0046929 [negative regulation of neurotransmitter secretion]
Show all
361 aa
40.7 kDa
No 1
PNKD-203
ENSP00000273077
ENST00000273077
Q8N490
[Direct mapping] Probable hydrolase PNKD
Show all
A0A024R415
[Target identity:100%; Query identity:100%] Paroxysmal nonkinesiogenic dyskinesia, isoform CRA_a
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004416 [hydroxyacylglutathione hydrolase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0032225 [regulation of synaptic transmission, dopaminergic]
GO:0042053 [regulation of dopamine metabolic process]
GO:0046872 [metal ion binding]
GO:0046929 [negative regulation of neurotransmitter secretion]
GO:0050884 [neuromuscular process controlling posture]
GO:0099523 [presynaptic cytosol]
Show all
385 aa
42.9 kDa
No 0
PNKD-204
ENSP00000414400
ENST00000436005
A0A8J8ZTU4
[Direct mapping] Probable hydrolase PNKD
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004416 [hydroxyacylglutathione hydrolase activity]
GO:0016787 [hydrolase activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0046872 [metal ion binding]
Show all
382 aa
42.5 kDa
No 0
PNKD-209
ENSP00000510415
ENST00000685415
A0A8I5KXK0
[Direct mapping] Probable hydrolase PNKD
Show all
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   TMHMM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004416 [hydroxyacylglutathione hydrolase activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0046872 [metal ion binding]
Show all
424 aa
47.3 kDa
No 0
PNKD-210
ENSP00000509627
ENST00000687736
A0A8I5KSD7
[Direct mapping] Probable hydrolase PNKD
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
325 aa
36.2 kDa
No 0
PNKD-211
ENSP00000508635
ENST00000688179
A0A8I5QKK6
[Direct mapping] Probable hydrolase PNKD
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
344 aa
38.5 kDa
No 0
PNKD-214
ENSP00000508450
ENST00000689816
A0A8I5KV27
[Direct mapping] Probable hydrolase PNKD
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
373 aa
41.6 kDa
No 0
PNKD-216
ENSP00000509580
ENST00000691220
A0A8I5KVK5
[Direct mapping] Probable hydrolase PNKD
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
258 aa
28.2 kDa
No 0
PNKD-219
ENSP00000509392
ENST00000692295
A0A8I5KXZ5
[Direct mapping] Probable hydrolase PNKD
Show all
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   Phobius predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Other nervous and sensory system diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
265 aa
29.7 kDa
No 0

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