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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1842.8
nTPM
GTEx:
1842.8
nTPM
FANTOM5:
320.8
Scaled Tags Per Million
Pig:
253.3
nTPM
Mouse:
2377.0
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042721
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1842.8
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1842.8
Samples: 105
Max nTPM: 3945.2
Min nTPM: 721.9
Std nTPM: 608.9
Median nTPM:
414_1
84 years, female
3945.2
126_1
63 years, male
3482.2
490_1
67 years, female
3456.3
468_1
89 years, male
3147.3
162_1
79 years, female
3118.0
415_1
77 years, female
3028.3
246_1
77 years, male
2777.8
32_1
67 years, male
2689.3
466_1
57 years, female
2687.6
149_1
88 years, male
2680.0
413_1
59 years, female
2579.9
115_1
83 years, male
2556.8
6_1
73 years, female
2485.5
9_1
66 years, female
2483.5
526_1
61 years, male
2469.6
265_1
87 years, male
2460.9
142_1
61 years, female
2459.6
153_1
70 years, female
2425.8
394_1
75 years, female
2420.0
217_1
76 years, male
2408.3
81_1
67 years, male
2335.6
189_1
76 years, male
2305.0
499_1
55 years, female
2301.1
389_1
86 years, female
2261.9
352_1
62 years, male
2256.5
377_1
82 years, female
2245.9
89_1
63 years, male
2241.3
503_1
68 years, male
2233.4
117_1
61 years, male
2218.6
425_1
59 years, female
2211.3
99_1
64 years, male
2206.6
315_1
62 years, female
2155.7
266_1
85 years, male
2106.8
137_1
83 years, male
2070.3
254_1
77 years, female
2007.7
518_1
75 years, female
1942.0
313_1
79 years, female
1927.1
375_1
74 years, female
1926.7
18_1
88 years, male
1918.2
172_1
72 years, female
1912.5
243_1
75 years, male
1895.0
396_1
62 years, male
1879.9
319_1
81 years, male
1866.5
376_1
75 years, female
1861.8
347_1
72 years, male
1853.6
43_1
64 years, female
1838.4
251_1
78 years, male
1837.4
404_1
82 years, female
1819.7
229_1
69 years, female
1815.9
491_1
89 years, female
1814.1
406_1
79 years, male
1813.9
386_1
76 years, male
1809.6
177_1
74 years, male
1808.5
355_1
70 years, female
1785.7
120_1
70 years, female
1714.8
335_1
73 years, female
1707.8
42_1
85 years, male
1686.1
288_1
66 years, female
1668.5
17_1
71 years, male
1658.5
119_1
70 years, female
1642.7
291_1
76 years, male
1639.8
356_1
87 years, female
1618.4
321_1
62 years, female
1617.1
354_1
81 years, female
1604.2
517_1
88 years, male
1597.7
379_1
60 years, male
1596.5
384_1
83 years, male
1579.8
163_1
78 years, male
1572.4
35_1
74 years, female
1571.7
447_1
81 years, male
1569.3
324_1
76 years, male
1554.0
109_1
81 years, female
1545.6
351_1
91 years, male
1509.8
237_1
82 years, male
1502.3
145_1
84 years, male
1482.2
349_1
83 years, male
1430.4
292_1
71 years, male
1424.2
405_1
91 years, male
1420.6
307_1
66 years, female
1407.4
350_1
84 years, female
1363.1
286_1
68 years, female
1357.0
501_1
88 years, male
1351.1
2_1
77 years, female
1345.6
495_1
57 years, female
1328.7
318_1
68 years, male
1296.4
139_1
64 years, female
1296.0
173_1
67 years, male
1255.6
480_1
63 years, male
1246.2
316_1
62 years, male
1231.0
4_1
88 years, female
1216.2
311_1
78 years, male
1198.6
348_1
84 years, male
1190.1
295_1
61 years, female
1181.0
264_1
73 years, female
1164.5
314_1
67 years, male
1151.5
293_1
68 years, female
1138.5
353_1
82 years, female
1136.5
320_1
89 years, female
1132.8
317_1
60 years, male
1099.0
452_1
88 years, female
1094.4
218_1
71 years, female
894.5
41_1
94 years, female
885.2
506_1
65 years, male
855.8
308_1
70 years, female
798.6
322_1
76 years, male
721.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
