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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:406.7 nTPM
FANTOM5:246.8 Scaled Tags Per Million
Pig:430.7 nTPM
Allen mouse:12.0 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

406.7
Sample id Sample description nTPM
Area postrema
nTPM: 133.8
2054 Male, age 76, both hemispheres 215.9
2306 Male, age 80, both hemispheres 99.5
2799 Male, age 61, both hemispheres 85.9
Dorsal medullary reticular nucleus
nTPM: 273.6
2040 Female, age 85, both hemispheres 434.0
2088 Male, age 76, both hemispheres 193.6
2373 Male, age 61, both hemispheres 193.3
Dorsal motor vagal complex
nTPM: 255.8
2133 Female, age 91, both hemispheres 461.4
2000 Male, age 74, unknown 351.3
2844 Male, age 55, unknown 299.0
2813 Female, age 72, unknown 290.1
2643 Male, age 74, both hemispheres 213.2
2807 Female, age 85, both hemispheres 176.6
2185 Male, age 76, both hemispheres 140.8
2797 Male, age 61, both hemispheres 113.6
Gigantocellular reticular nuclei, medullary
nTPM: 267.6
2462 Male, age 74, both hemispheres 449.5
1876 Female, age 85, both hemispheres 270.7
2022 Male, age 76, right hemisphere 252.6
2310 Male, age 80, both hemispheres 249.3
2387 Female, age 91, both hemispheres 203.0
2314 Male, age 61, both hemispheres 180.5
Gigantocellular reticular nuclei, pars
nTPM: 311.0
2168 Male, age 76, both hemispheres 454.5
2084 Female, age 85, both hemispheres 336.5
2336 Male, age 61, both hemispheres 291.4
2706 Male, age 80, both hemispheres 242.2
2330 Male, age 80, both hemispheres 230.3
Inferior olive
nTPM: 197.5
2085 Female, age 85, both hemispheres 304.9
2563 Male, age 74, both hemispheres 219.1
2628 Female, age 91, both hemispheres 171.3
2178 Male, age 61, both hemispheres 147.0
2379 Male, age 80, both hemispheres 145.3
Lateral medullary reticular nucleus
nTPM: 254.2
2044 Male, age 76, both hemispheres 360.0
2305 Male, age 74, both hemispheres 359.5
2190 Female, age 85, both hemispheres 238.4
2374 Male, age 61, both hemispheres 211.8
2804 Female, age 91, both hemispheres 209.0
2852 Male, age 80, both hemispheres 146.3
Medial olivary nucleus
nTPM: 147.9
2851 Male, age 80, both hemispheres 177.2
1962 Male, age 76, both hemispheres 161.1
2138 Female, age 91, both hemispheres 131.2
1943 Male, age 61, both hemispheres 122.0
Medial vestibular nucleus
nTPM: 328.2
2134 Male, age 76, both hemispheres 435.8
2801 Male, age 74, both hemispheres 361.7
2743 Female, age 85, both hemispheres 338.7
2803 Female, age 91, both hemispheres 292.3
2624 Male, age 61, both hemispheres 286.6
2093 Male, age 80, both hemispheres 254.4
Motor hypoglossal nucleus
nTPM: 305.4
2461 Male, age 61, both hemispheres 434.7
2125 Female, age 91, both hemispheres 317.7
2132 Female, age 85, both hemispheres 312.5
2277 Male, age 76, both hemispheres 232.3
2182 Male, age 80, both hemispheres 229.9
Nucleus ambiguus
nTPM: 209.3
2096 Female, age 85, both hemispheres 272.1
2071 Male, age 76, both hemispheres 146.4
Nucleus cuneatus
nTPM: 181.3
2131 Male, age 76, both hemispheres 272.3
2564 Male, age 74, both hemispheres 239.0
2376 Male, age 61, both hemispheres 216.0
2562 Male, age 61, both hemispheres 181.5
2100 Male, age 76, both hemispheres 177.2
2381 Male, age 80, both hemispheres 161.5
2808 Female, age 85, both hemispheres 135.0
2805 Female, age 91, both hemispheres 126.3
2380 Male, age 80, both hemispheres 122.9
Nucleus gracilis
nTPM: 157.3
2627 Male, age 74, both hemispheres 262.7
2382 Male, age 80, both hemispheres 106.9
2299 Female, age 85, both hemispheres 102.3
Nucleus raphe obscurus
nTPM: 205.1
2845 Female, age 85, midline 269.6
2800 Male, age 61, midline 256.6
2142 Male, age 76, midline 89.2
Nucleus raphe pallidus
nTPM: 242.1
2183 Male, age 80, midline 331.3
1924 Male, age 61, midline 279.8
2145 Male, age 76, midline 115.1
Nucleus tractus solitarii
nTPM: 271.9
2144 Female, age 91, right hemisphere 422.2
2656 Male, age 76, both hemispheres 256.6
2191 Female, age 85, both hemispheres 225.8
2307 Male, age 80, both hemispheres 182.8
Parvicellular reticular nuclei
nTPM: 295.4
2558 Male, age 74, both hemispheres 323.1
2119 Male, age 80, both hemispheres 302.8
2095 Male, age 76, both hemispheres 260.4
Parvicellular reticular nuclei, medullary
nTPM: 324.7
2189 Female, age 91, both hemispheres 354.1
2091 Female, age 85, both hemispheres 352.5
2181 Male, age 80, left hemisphere 267.5
Peritrigeminal nucleus
nTPM: 300.9
2179 Male, age 61, both hemispheres 351.0
2136 Male, age 76, both hemispheres 289.5
2067 Female, age 85, both hemispheres 262.3
Prepositus hypoglossal nucleus
nTPM: 257.8
2855 Female, age 85, right hemisphere 293.9
2086 Male, age 80, both hemispheres 221.7
Spinal trigeminal nucleus, caudal
nTPM: 297.0
2390 Female, age 91, both hemispheres 547.0
2642 Male, age 74, both hemispheres 283.3
2447 Male, age 76, both hemispheres 268.1
2312 Male, age 61, both hemispheres 196.2
2308 Male, age 80, both hemispheres 190.3
Spinal trigeminal nucleus, interpolar
nTPM: 406.7
2625 Male, age 61, both hemispheres 637.2
2066 Male, age 76, right hemisphere 463.8
2389 Female, age 91, both hemispheres 328.9
2033 Male, age 80, both hemispheres 314.5
2386 Female, age 85, both hemispheres 288.8
Spinal vestibular nucleus
nTPM: 255.5
2186 Female, age 91, both hemispheres 303.7
2780 Male, age 80, both hemispheres 289.9
2806 Female, age 85, both hemispheres 256.2
2796 Male, age 61, both hemispheres 242.7
2748 Male, age 76, both hemispheres 235.2
2384 Male, age 74, both hemispheres 205.5
Superior vestibular nucleus
nTPM: 246.3
2015 Male, age 80, both hemispheres 264.2
2383 Male, age 74, both hemispheres 258.5
2061 Male, age 76, both hemispheres 216.0
Ventral medullary reticular nucleus
nTPM: 236.7
2060 Male, age 76, both hemispheres 241.2
2372 Male, age 61, both hemispheres 232.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 258.5
2741 Female, age 85, both hemispheres 324.3
1986 Male, age 76, both hemispheres 302.1
2180 Male, age 61, both hemispheres 272.5
2302 Female, age 91, both hemispheres 210.0
2118 Male, age 80, both hemispheres 183.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

246.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 246.8
FF:10038-101F2 18-64 years, mixed 294.3
FF:10174-103C3 60 years, female 268.7
FF:10155-103A2 76 years, female 177.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 430.7
Samples: 4

Max nTPM: 475.1
Min nTPM: 324.2
Sample A Female 463.3
Sample B Female 460.1
Sample C Male 475.1
Sample D Male 324.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 12.0
1127 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 12.0
1128 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 11.3

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