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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:69.1 nTPM
GTEx:69.1 nTPM
FANTOM5:90.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053440
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 69.1
Samples: 156

Max nTPM: 143.9
Min nTPM: 28.8
Std nTPM: 18.6
Median nTPM: 63.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 143.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 139.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 119.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 110.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 109.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 107.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 106.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 104.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 100.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 100.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 98.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 97.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 96.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 96.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 95.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 95.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 92.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 92.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 91.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 90.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 89.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 89.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 88.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 88.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 88.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 87.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 87.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 87.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 86.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 85.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 85.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 83.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 83.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 82.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 82.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 81.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 81.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 80.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 80.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 79.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 79.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 78.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 78.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 78.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 77.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 77.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 77.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 76.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 76.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 76.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 74.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 74.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 74.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 74.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 73.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 73.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 73.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 72.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 72.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 71.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 70.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 69.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 69.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 69.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 69.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 68.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 68.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 67.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 67.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 67.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 66.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 66.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 66.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 66.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 65.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 63.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 63.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 63.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 63.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 62.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 62.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 62.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 62.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 62.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 62.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 62.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 61.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 61.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 61.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 61.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 61.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 60.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 60.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 59.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 59.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 59.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 58.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 58.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 58.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 58.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 58.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 58.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 57.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 57.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 57.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 57.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 57.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 57.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 57.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 56.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 56.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 56.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 56.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 56.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 55.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 55.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 55.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 55.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 55.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 55.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 54.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 54.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 54.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 54.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 54.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 54.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 54.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 54.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 53.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 53.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 53.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 53.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 53.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 53.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 53.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 52.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 52.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 52.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 51.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 51.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 51.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 51.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 50.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 50.7
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 50.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 49.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 48.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 47.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 46.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 45.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 44.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 43.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 43.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 41.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 39.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 28.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 90.4
FF:10204-103F6 68 years, female 90.4

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