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ATP6V1F
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:295.5 nTPM
HPA Brain:146.9 nTPM
GTEx:295.5 nTPM
FANTOM5:172.7 Scaled Tags Per Million
Pig:92.1 nTPM
Mouse:342.9 nTPM
Allen mouse:17.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.9
Sample id Sample description nTPM
Amygdala
nTPM: 146.9
2814 Male, age 76, right hemisphere 199.9
1987 Female, age 91, left hemisphere 140.5
2517 Female, age 94, left hemisphere 137.5
2514 Male, age 75, right hemisphere 131.6
2695 Female, age 67, right hemisphere 124.9
Basal amygdala
nTPM: 143.4
2243 Female, age 91, right hemisphere 161.2
2110 Male, age 80, left hemisphere 154.9
2685 Female, age 94, left hemisphere 154.4
1955 Male, age 76, both hemispheres 149.4
2609 Male, age 75, right hemisphere 138.1
2827 Female, age 67, right hemisphere 102.6
Central amygdala
nTPM: 144.7
2826 Female, age 94, left hemisphere 166.1
1905 Male, age 76, both hemispheres 160.5
2239 Male, age 80, left hemisphere 149.4
2701 Female, age 91, right hemisphere 125.4
2515 Male, age 75, right hemisphere 122.3
Corticomedial amygdala
nTPM: 145.2
2829 Male, age 80, left hemisphere 188.6
2242 Female, age 91, right hemisphere 173.2
2240 Male, age 76, both hemispheres 144.9
2429 Female, age 94, left hemisphere 137.8
2428 Male, age 75, right hemisphere 120.0
2535 Female, age 67, right hemisphere 106.6
Lateral amygdala
nTPM: 130.0
2534 Female, age 94, left hemisphere 169.3
1883 Male, age 76, both hemispheres 157.0
2516 Male, age 75, right hemisphere 123.5
2255 Female, age 91, right hemisphere 115.7
2256 Male, age 80, left hemisphere 115.3
2830 Female, age 67, right hemisphere 99.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 295.5
Samples: 152

Max nTPM: 738.9
Min nTPM: 134.8
Std nTPM: 103.0
Median nTPM: 277.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 738.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 696.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 677.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 674.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 584.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 492.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 457.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 448.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 439.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 430.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 428.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 423.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 420.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 413.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 411.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 410.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 403.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 398.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 397.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 395.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 394.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 391.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 387.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 377.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 370.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 367.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 366.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 364.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 362.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 362.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 360.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 357.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 355.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 353.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 353.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 352.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 352.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 352.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 348.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 342.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 340.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 337.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 332.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 329.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 328.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 327.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 326.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 326.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 322.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 322.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 318.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 315.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 315.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 309.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 309.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 309.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 305.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 304.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 301.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 299.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 299.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 297.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 295.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 295.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 293.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 293.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 289.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 286.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 286.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 284.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 283.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 282.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 282.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 281.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 281.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 278.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 276.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 275.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 273.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 273.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 272.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 270.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 270.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 270.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 270.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 267.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 264.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 262.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 261.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 261.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 260.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 260.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 259.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 257.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 253.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 251.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 250.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 249.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 247.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 247.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 245.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 244.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 240.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 240.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 239.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 239.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 237.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 237.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 236.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 233.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 231.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 231.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 229.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 229.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 227.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 226.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 224.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 219.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 218.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 217.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 213.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 211.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 206.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 204.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 202.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 200.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 200.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 200.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 199.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 196.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 195.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 188.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 185.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 185.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 185.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 183.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 180.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 179.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 178.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 177.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 176.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 176.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 173.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 173.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 170.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 169.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 168.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 166.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 150.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 149.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 134.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 172.7
FF:10151-102I7 76 years, female 172.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
Pig sample Sample description nTPM
Amygdala
nTPM: 92.2
Samples: 4

Max nTPM: 127.0
Min nTPM: 78.7
Sample A Female 127.0
Sample B Female 83.1
Sample C Male 78.7
Sample D Male 79.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 342.9
Samples: 4

Max nTPM: 352.5
Min nTPM: 333.0
Sample A Male 344.9
Sample B Male 352.5
Sample C Female 333.0
Sample D Female 341.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.0
393251 Antisense, RP_040804_02_H11, Mouse strain C57BL/6J (56 days, male) 17.0

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