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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:375.2 nTPM
HPA Brain:355.2 nTPM
GTEx:375.2 nTPM
FANTOM5:435.1 Scaled Tags Per Million
Pig:354.7 nTPM
Mouse:373.5 nTPM
Allen mouse:25.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.2
Sample id Sample description nTPM
Amygdala
nTPM: 230.2
2517 Female, age 94, left hemisphere 270.2
2814 Male, age 76, right hemisphere 266.3
1987 Female, age 91, left hemisphere 257.2
2514 Male, age 75, right hemisphere 202.3
2695 Female, age 67, right hemisphere 155.2
Basal amygdala
nTPM: 355.2
2243 Female, age 91, right hemisphere 546.3
2110 Male, age 80, left hemisphere 437.2
2685 Female, age 94, left hemisphere 405.0
1955 Male, age 76, both hemispheres 312.5
2609 Male, age 75, right hemisphere 255.4
2827 Female, age 67, right hemisphere 174.7
Central amygdala
nTPM: 246.6
2239 Male, age 80, left hemisphere 364.5
2826 Female, age 94, left hemisphere 250.9
1905 Male, age 76, both hemispheres 216.8
2701 Female, age 91, right hemisphere 208.9
2515 Male, age 75, right hemisphere 192.0
Corticomedial amygdala
nTPM: 337.6
2829 Male, age 80, left hemisphere 519.2
2429 Female, age 94, left hemisphere 398.6
2242 Female, age 91, right hemisphere 328.4
2240 Male, age 76, both hemispheres 300.1
2428 Male, age 75, right hemisphere 244.9
2535 Female, age 67, right hemisphere 234.2
Lateral amygdala
nTPM: 242.5
2534 Female, age 94, left hemisphere 334.5
1883 Male, age 76, both hemispheres 298.3
2256 Male, age 80, left hemisphere 277.5
2255 Female, age 91, right hemisphere 214.3
2516 Male, age 75, right hemisphere 210.8
2830 Female, age 67, right hemisphere 119.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 375.2
Samples: 152

Max nTPM: 983.6
Min nTPM: 77.4
Std nTPM: 196.1
Median nTPM: 331.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 983.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 951.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 930.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 896.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 847.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 812.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 743.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 738.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 719.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 708.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 707.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 695.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 687.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 685.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 681.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 681.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 676.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 645.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 639.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 637.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 634.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 603.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 585.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 563.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 562.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 558.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 552.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 551.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 541.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 538.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 532.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 522.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 510.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 510.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 500.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 494.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 488.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 476.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 475.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 469.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 468.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 467.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 466.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 463.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 452.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 447.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 447.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 439.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 436.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 434.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 428.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 427.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 424.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 421.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 410.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 408.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 407.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 404.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 395.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 392.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 391.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 390.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 389.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 388.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 378.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 375.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 375.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 368.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 367.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 364.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 344.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 341.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 341.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 338.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 335.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 331.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 331.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 322.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 321.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 321.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 320.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 317.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 317.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 316.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 314.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 313.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 306.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 306.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 306.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 294.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 292.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 288.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 285.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 285.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 284.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 279.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 276.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 275.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 266.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 265.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 262.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 255.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 254.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 250.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 245.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 239.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 236.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 232.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 229.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 229.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 229.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 222.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 218.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 215.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 212.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 208.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 204.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 204.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 202.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 199.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 198.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 194.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 192.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 191.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 191.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 185.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 184.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 183.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 183.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 178.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 172.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 171.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 171.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 170.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 170.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 166.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 166.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 164.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 164.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 162.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 160.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 160.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 139.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 133.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 98.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 96.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 84.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 81.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 77.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

435.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 435.1
FF:10151-102I7 76 years, female 435.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

354.7
Pig sample Sample description nTPM
Amygdala
nTPM: 354.7
Samples: 4

Max nTPM: 500.7
Min nTPM: 276.8
Sample A Female 500.7
Sample B Female 287.4
Sample C Male 276.8
Sample D Male 353.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 373.5
Samples: 4

Max nTPM: 399.3
Min nTPM: 344.4
Sample A Male 382.6
Sample B Male 399.3
Sample C Female 367.5
Sample D Female 344.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.3
69838711 Antisense, RP_050317_04_F05, Mouse strain C57BL/6J (56 days, male) 28.0
73718053 Antisense, RP_051121_04_C07, Mouse strain C57BL/6J (56 days, male) 22.5

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