MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:148.1 nTPM
HPA Brain:166.0 nTPM
GTEx:148.1 nTPM
FANTOM5:263.4 Scaled Tags Per Million
Pig:143.0 nTPM
Mouse:115.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 166.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 144.7
1870 Female, age 42, unknown 171.0
2666 Male, age 74, left hemisphere 167.8
2019 Male, age 18, unknown 153.4
2586 Male, age 75, left hemisphere 151.6
2828 Female, age 72, unknown 143.5
1827 Male, age 72, unknown 143.2
2411 Female, age 72, unknown 138.7
1833 Male, age 53, unknown 133.6
1830 Male, age 51, unknown 133.2
2219 Male, age 76, both hemispheres 111.5
Dorsal raphe nucleus
nTPM: 141.3
2047 Male, age 72, unknown 149.0
2750 Male, age 76, both hemispheres 143.1
2298 Female, age 72, unknown 142.7
1828 Male, age 53, unknown 136.0
2016 Female, age 72, unknown 135.7
Inferior colliculus
nTPM: 120.5
1890 Male, age 53, unknown 132.2
2097 Female, age 72, unknown 128.7
1848 Female, age 42, unknown 114.3
2849 Male, age 72, unknown 106.9
Median raphe nucleus
nTPM: 135.8
2220 Male, age 76, midline 135.8
Periaquaductal grey, anterior
nTPM: 137.6
2502 Female, age 75, unknown 142.6
1947 Male, age 18, unknown 140.1
1795 Male, age 51, unknown 130.1
Periaquaductal grey, dorsal
nTPM: 119.9
1831 Male, age 72, unknown 134.8
1840 Male, age 53, unknown 122.4
2850 Male, age 76, both hemispheres 113.9
2464 Female, age 72, unknown 108.5
Periaquaductal grey, lateral
nTPM: 113.5
2053 Male, age 18, unknown 127.0
2272 Male, age 74, both hemispheres 108.2
2140 Male, age 76, both hemispheres 105.4
Pretectal area
nTPM: 137.7
2007 Male, age 72, unknown 156.5
1817 Female, age 42, unknown 155.7
1815 Male, age 53, unknown 154.3
1816 Male, age 51, unknown 150.8
2407 Male, age 75, both hemispheres 138.4
1944 Female, age 72, unknown 136.8
2667 Female, age 75, unknown 134.1
2224 Female, age 72, unknown 124.8
2825 Male, age 18, unknown 124.2
2273 Male, age 74, both hemispheres 123.2
2316 Male, age 76, right hemisphere 116.1
Red nucleus
nTPM: 158.9
1821 Female, age 72, unknown 185.1
1865 Male, age 51, unknown 176.1
2588 Male, age 74, left hemisphere 172.3
2725 Female, age 75, unknown 167.2
2584 Male, age 75, left hemisphere 164.9
1904 Male, age 53, unknown 163.4
2503 Female, age 72, unknown 163.4
1954 Female, age 42, unknown 147.7
2227 Male, age 72, unknown 144.0
2769 Male, age 72, unknown 143.2
2823 Male, age 76, right hemisphere 139.6
2785 Male, age 18, unknown 139.4
Substantia nigra
nTPM: 166.0
1851 Male, age 51, unknown 195.7
2699 Male, age 18, unknown 187.5
1916 Female, age 42, unknown 175.8
2583 Male, age 75, right hemisphere 175.8
2665 Male, age 74, both hemispheres 166.1
2409 Female, age 72, unknown 157.1
1889 Female, age 72, unknown 154.5
2241 Male, age 72, unknown 154.4
1941 Male, age 53, unknown 152.1
2590 Female, age 75, unknown 141.4
Superior colliculus
nTPM: 142.7
2587 Male, age 74, left hemisphere 169.8
1913 Female, age 42, unknown 165.8
2668 Female, age 75, unknown 154.3
1995 Male, age 72, unknown 152.7
2664 Male, age 75, both hemispheres 143.5
1796 Male, age 53, unknown 142.8
2087 Female, age 72, unknown 129.7
2261 Male, age 18, unknown 128.1
1895 Male, age 76, right hemisphere 120.3
1839 Male, age 51, unknown 120.2
Ventral tegmental area
nTPM: 164.4
2223 Female, age 72, unknown 240.4
1915 Female, age 42, unknown 162.5
1942 Male, age 51, unknown 149.6
2021 Male, age 53, unknown 148.2
2410 Female, age 72, unknown 145.4
2218 Male, age 76, both hemispheres 140.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 148.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 148.1
Samples: 139

Max nTPM: 427.1
Min nTPM: 83.2
Std nTPM: 45.9
Median nTPM: 137.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 427.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 311.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 270.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 267.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 246.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 231.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 225.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 213.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 211.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 208.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 204.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 263.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 263.4
FF:10158-103A5 76 years, female 263.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 143.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 143.0
Samples: 4

Max nTPM: 171.2
Min nTPM: 112.8
Sample A Female 171.2
Sample B Female 137.1
Sample C Male 150.9
Sample D Male 112.8
Midbrain
nTPM: 125.8
Samples: 4

Max nTPM: 157.3
Min nTPM: 94.8
Sample A Female 157.3
Sample B Female 124.7
Sample C Male 126.5
Sample D Male 94.8
Periaqueductal gray
nTPM: 92.8
Samples: 3

Max nTPM: 100.8
Min nTPM: 86.3
Sample B Female 91.2
Sample C Male 100.8
Sample D Male 86.3
Superior colliculi
nTPM: 111.1
Samples: 4

Max nTPM: 136.8
Min nTPM: 80.8
Sample A Female 124.8
Sample B Female 80.8
Sample C Male 136.8
Sample D Male 102.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 115.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 122.6
Min nTPM: 98.2
Sample A Male 118.7
Sample B Male 122.6
Sample C Female 98.2
Sample D Female 122.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74357597 Antisense, RP_060117_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0

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