We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PSMA1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • PSMA1
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.2 nTPM
GTEx:54.2 nTPM
FANTOM5:103.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037646Antibody CAB033765Antibody CAB079995
Squamous epithelial cells MediumMediumMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 54.2
Samples: 156

Max nTPM: 94.0
Min nTPM: 30.7
Std nTPM: 11.8
Median nTPM: 52.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 94.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 90.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 84.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 82.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 78.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 75.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 75.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 75.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 74.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 71.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 70.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 70.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 70.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 70.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 69.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 69.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 69.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 69.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 69.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 69.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 69.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 69.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 68.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 67.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 67.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 66.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 65.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 65.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 65.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 65.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 64.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 64.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 63.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 63.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 62.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 62.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 61.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 61.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 61.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 61.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 61.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 61.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 61.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 61.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 60.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 60.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 59.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 59.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 59.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 59.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 58.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 58.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 58.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 57.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 57.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 57.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 57.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 57.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 56.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 56.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 56.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 56.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 55.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 55.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 55.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 55.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 55.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 54.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 54.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 54.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 53.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 53.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 53.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 53.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 53.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 53.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 52.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 52.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 52.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 52.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 52.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 52.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 52.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 52.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 51.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 51.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 51.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 51.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 51.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 51.0
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 50.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 50.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 50.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 50.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 50.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 50.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 50.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 50.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 50.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 49.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 49.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 49.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 49.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 49.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 48.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 48.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 48.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 47.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 47.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 47.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 47.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 47.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 47.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 47.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 46.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 46.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 46.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 46.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 46.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 45.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 45.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 44.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 44.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 44.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 43.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 43.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 43.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 43.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 42.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 42.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 42.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 42.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 41.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 41.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 41.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 41.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 41.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 40.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 40.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 39.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 39.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 37.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 37.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 37.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 36.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 36.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 36.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 36.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 36.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 36.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 36.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 35.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 35.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 34.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 32.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 30.7
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 103.3
FF:10204-103F6 68 years, female 103.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org