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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
810.0
nTPM
GTEx:
810.0
nTPM
FANTOM5:
381.5
Scaled Tags Per Million
Pig:
170.5
nTPM
Mouse:
473.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA026578
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
810.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 810.0
Samples: 105
Max nTPM: 1486.9
Min nTPM: 305.2
Std nTPM: 243.4
Median nTPM:
218_1
71 years, female
1486.9
352_1
62 years, male
1486.7
386_1
76 years, male
1291.5
354_1
81 years, female
1266.8
319_1
81 years, male
1240.2
237_1
82 years, male
1209.3
355_1
70 years, female
1207.5
316_1
62 years, male
1183.9
163_1
78 years, male
1183.5
172_1
72 years, female
1151.3
322_1
76 years, male
1151.2
6_1
73 years, female
1141.5
375_1
74 years, female
1108.3
405_1
91 years, male
1091.3
321_1
62 years, female
1090.3
35_1
74 years, female
1072.7
447_1
81 years, male
1060.8
425_1
59 years, female
1050.9
292_1
71 years, male
1038.9
377_1
82 years, female
1031.5
350_1
84 years, female
1007.3
229_1
69 years, female
1007.0
356_1
87 years, female
1001.7
318_1
68 years, male
975.0
320_1
89 years, female
967.5
353_1
82 years, female
960.3
189_1
76 years, male
957.7
243_1
75 years, male
953.9
379_1
60 years, male
947.4
153_1
70 years, female
940.3
389_1
86 years, female
938.3
246_1
77 years, male
937.1
480_1
63 years, male
933.7
526_1
61 years, male
931.9
293_1
68 years, female
918.8
251_1
78 years, male
902.9
126_1
63 years, male
898.7
376_1
75 years, female
889.6
286_1
68 years, female
882.9
518_1
75 years, female
882.4
394_1
75 years, female
877.3
335_1
73 years, female
868.8
217_1
76 years, male
865.0
503_1
68 years, male
858.1
349_1
83 years, male
856.4
307_1
66 years, female
852.2
348_1
84 years, male
834.6
347_1
72 years, male
829.0
404_1
82 years, female
809.6
468_1
89 years, male
805.5
406_1
79 years, male
799.7
137_1
83 years, male
798.5
177_1
74 years, male
790.1
81_1
67 years, male
781.5
9_1
66 years, female
781.1
117_1
61 years, male
780.5
291_1
76 years, male
764.9
466_1
57 years, female
757.7
415_1
77 years, female
755.2
324_1
76 years, male
746.5
517_1
88 years, male
740.5
17_1
71 years, male
728.9
43_1
64 years, female
725.6
266_1
85 years, male
720.8
2_1
77 years, female
717.5
351_1
91 years, male
707.6
145_1
84 years, male
696.0
311_1
78 years, male
695.2
499_1
55 years, female
687.5
115_1
83 years, male
686.8
396_1
62 years, male
685.6
18_1
88 years, male
679.3
495_1
57 years, female
675.7
265_1
87 years, male
672.1
99_1
64 years, male
670.9
173_1
67 years, male
666.8
384_1
83 years, male
661.1
490_1
67 years, female
652.6
142_1
61 years, female
647.4
317_1
60 years, male
639.9
254_1
77 years, female
639.5
288_1
66 years, female
632.5
264_1
73 years, female
621.3
162_1
79 years, female
615.6
4_1
88 years, female
606.7
506_1
65 years, male
598.2
120_1
70 years, female
580.9
452_1
88 years, female
569.6
42_1
85 years, male
538.7
313_1
79 years, female
535.3
32_1
67 years, male
532.3
139_1
64 years, female
516.9
315_1
62 years, female
508.1
491_1
89 years, female
501.4
295_1
61 years, female
497.1
414_1
84 years, female
491.0
119_1
70 years, female
485.9
109_1
81 years, female
484.3
149_1
88 years, male
473.1
314_1
67 years, male
427.5
41_1
94 years, female
413.0
308_1
70 years, female
390.0
413_1
59 years, female
367.3
89_1
63 years, male
366.3
501_1
88 years, male
305.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
