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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:269.3 nTPM
HPA Brain:201.7 nTPM
GTEx:269.3 nTPM
FANTOM5:163.3 Scaled Tags Per Million
Pig:69.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 159.8
2565 Male, age 75, midline 226.3
2048 Male, age 55, midline 152.0
2816 Male, age 47, midline 150.6
2194 Female, age 79, both hemispheres 142.5
1981 Female, age 72, midline 127.3
Cervical spinal cord, dorsal horn
nTPM: 125.5
2296 Male, age 66, both hemispheres 151.6
2173 Female, age 72, unknown 145.1
1877 Male, age 55, unknown 127.9
2069 Male, age 47, both hemispheres 120.0
2297 Male, age 75, both hemispheres 116.6
2721 Male, age 90, both hemispheres 91.9
Cervical spinal cord, ventral horn
nTPM: 201.7
2480 Male, age 75, both hemispheres 275.1
2809 Male, age 90, both hemispheres 265.3
2295 Male, age 66, both hemispheres 196.0
2820 Female, age 79, both hemispheres 182.6
2068 Male, age 55, unknown 167.5
2098 Female, age 72, unknown 123.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 269.3
Samples: 159

Max nTPM: 682.3
Min nTPM: 61.0
Std nTPM: 115.9
Median nTPM: 245.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 682.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 646.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 581.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 562.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 560.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 527.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 499.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 496.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 487.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 486.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 474.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 471.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 452.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 450.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 448.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 425.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 420.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 410.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 408.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 406.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 389.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 388.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 386.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 383.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 380.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 380.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 376.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 372.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 369.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 368.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 367.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 366.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 366.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 357.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 351.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 346.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 339.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 338.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 337.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 337.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 334.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 333.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 333.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 332.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 323.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 323.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 320.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 318.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 315.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 314.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 306.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 304.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 302.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 300.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 297.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 293.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 292.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 287.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 286.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 285.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 284.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 278.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 277.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 276.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 271.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 270.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 268.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 267.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 267.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 263.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 261.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 261.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 260.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 259.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 255.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 255.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 254.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 251.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 250.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 245.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 244.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 244.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 241.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 240.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 240.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 240.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 239.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 238.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 231.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 230.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 222.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 217.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 217.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 216.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 215.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 214.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 212.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 212.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 209.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 205.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 205.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 204.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 204.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 204.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 202.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 201.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 201.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 198.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 198.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 197.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 197.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 194.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 193.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 193.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 191.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 189.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 187.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 184.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 182.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 180.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 179.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 177.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 175.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 174.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 174.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 173.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 172.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 168.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 168.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 167.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 166.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 165.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 164.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 164.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 156.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 155.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 155.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 154.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 153.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 153.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 151.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 149.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 148.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 146.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 145.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 145.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 137.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 136.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 136.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 126.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 115.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 114.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 106.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 101.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 97.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 61.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 163.3
FF:10181-103D1 60 years, female 180.8
FF:10159-103A6 76 years, female 145.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 55.8
Samples: 4

Max nTPM: 59.0
Min nTPM: 53.5
Sample A Female 54.3
Sample B Female 53.5
Sample C Male 56.4
Sample D Male 59.0
Ventral spinal cord
nTPM: 69.7
Samples: 4

Max nTPM: 82.9
Min nTPM: 57.8
Sample A Female 70.0
Sample B Female 68.0
Sample C Male 57.8
Sample D Male 82.9

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