We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DAD1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • DAD1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:160.4 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:62.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA028882
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 160.4
Samples: 246

Max nTPM: 393.6
Min nTPM: 77.0
Std nTPM: 42.2
Median nTPM: 153.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 393.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 351.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 285.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 279.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 278.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 254.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 251.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 249.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 240.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 238.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 237.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 234.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 234.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 232.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 232.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 229.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 228.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 225.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 220.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 219.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 219.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 218.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 217.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 215.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 214.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 213.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 213.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 211.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 209.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 209.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 209.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 203.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 202.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 202.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 200.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 199.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 199.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 198.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 195.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 194.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 193.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 192.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 191.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 191.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 190.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 189.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 189.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 189.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 188.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 188.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 187.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 186.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 185.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 184.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 183.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 182.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 182.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 181.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 181.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 181.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 181.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 181.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 181.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 181.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 180.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 180.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 180.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 179.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 179.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 178.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 177.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 176.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 176.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 175.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 175.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 174.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 174.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 174.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 174.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 173.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 173.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 172.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 171.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 171.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 171.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 171.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 171.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 170.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 170.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 167.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 167.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 167.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 167.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 166.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 166.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 165.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 165.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 165.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 164.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 163.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 163.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 163.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 162.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 161.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 161.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 161.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 160.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 159.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 159.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 159.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 159.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 158.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 158.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 158.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 157.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 157.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 157.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 156.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 155.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 154.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 154.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 153.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 153.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 152.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 151.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 151.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 151.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 151.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 150.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 150.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 149.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 149.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 149.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 149.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 149.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 148.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 148.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 148.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 148.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 148.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 147.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 147.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 147.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 147.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 147.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 146.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 146.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 146.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 145.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 143.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 143.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 142.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 142.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 142.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 142.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 141.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 140.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 140.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 140.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 140.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 139.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 138.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 138.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 138.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 137.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 137.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 136.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 135.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 134.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 134.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 134.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 134.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 133.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 133.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 132.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 131.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 131.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 131.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 130.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 130.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 130.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 129.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 129.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 128.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 127.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 126.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 126.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 126.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 126.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 126.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 126.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 125.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 125.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 125.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 124.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 124.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 122.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 122.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 121.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 121.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 121.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 121.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 120.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 120.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 119.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 119.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 119.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 119.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 118.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 118.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 117.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 117.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 116.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 116.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 116.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 115.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 115.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 113.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 113.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 113.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 113.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 112.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 112.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 111.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 110.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 110.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 109.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 107.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 106.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 106.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 105.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 104.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 104.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 104.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 104.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 103.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 102.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 101.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 100.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 94.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.0
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 111.1
FF:10164-103B2 76 years, female 111.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.3
Pig sample Sample description nTPM
Caudate
nTPM: 62.3
Samples: 4

Max nTPM: 67.6
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 67.6
Sample C Male 57.9
Sample D Male 67.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org