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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:235.4 nTPM
HPA Brain:169.0 nTPM
GTEx:235.4 nTPM
FANTOM5:211.4 Scaled Tags Per Million
Pig:113.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 159.0
1981 Female, age 72, midline 234.8
2048 Male, age 55, midline 162.7
2816 Male, age 47, midline 149.1
2565 Male, age 75, midline 129.9
2194 Female, age 79, both hemispheres 118.5
Cervical spinal cord, dorsal horn
nTPM: 169.0
2173 Female, age 72, unknown 243.9
2296 Male, age 66, both hemispheres 223.8
2069 Male, age 47, both hemispheres 165.1
1877 Male, age 55, unknown 137.3
2721 Male, age 90, both hemispheres 136.3
2297 Male, age 75, both hemispheres 107.5
Cervical spinal cord, ventral horn
nTPM: 147.2
2098 Female, age 72, unknown 239.7
2809 Male, age 90, both hemispheres 154.6
2068 Male, age 55, unknown 132.5
2480 Male, age 75, both hemispheres 132.0
2295 Male, age 66, both hemispheres 120.0
2820 Female, age 79, both hemispheres 104.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 235.4
Samples: 159

Max nTPM: 414.0
Min nTPM: 120.4
Std nTPM: 51.1
Median nTPM: 229.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 414.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 382.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 372.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 344.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 337.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 328.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 328.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 328.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 327.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 327.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 323.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 311.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 309.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 304.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 298.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 298.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 298.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 296.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 295.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 294.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 291.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 288.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 288.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 285.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 284.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 279.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 279.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 278.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 277.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 277.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 276.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 275.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 274.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 273.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 272.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 271.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 271.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 268.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 266.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 266.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 263.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 263.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 261.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 261.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 258.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 258.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 257.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 256.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 256.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 255.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 255.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 255.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 254.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 251.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 250.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 247.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 246.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 245.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 245.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 244.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 243.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 242.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 241.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 241.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 240.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 240.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 240.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 237.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 235.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 235.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 234.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 234.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 234.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 233.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 233.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 233.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 233.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 233.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 230.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 229.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 229.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 229.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 229.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 228.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 228.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 228.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 227.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 227.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 227.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 227.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 226.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 226.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 225.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 224.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 224.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 224.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 224.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 223.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 222.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 222.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 222.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 221.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 221.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 221.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 218.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 217.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 216.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 215.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 215.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 214.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 213.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 212.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 210.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 208.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 207.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 206.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 206.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 206.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 205.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 205.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 203.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 201.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 200.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 200.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 199.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 199.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 197.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 197.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 196.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 196.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 194.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 190.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 186.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 185.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 185.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 183.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 183.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 183.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 182.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 181.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 180.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 179.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 178.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 173.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 173.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 171.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 163.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 163.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 158.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 141.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 141.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 137.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 136.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 134.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 134.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 130.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 123.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 120.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 211.4
FF:10181-103D1 60 years, female 260.0
FF:10159-103A6 76 years, female 162.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 98.5
Samples: 4

Max nTPM: 122.4
Min nTPM: 80.0
Sample A Female 95.5
Sample B Female 96.1
Sample C Male 122.4
Sample D Male 80.0
Ventral spinal cord
nTPM: 113.2
Samples: 4

Max nTPM: 127.4
Min nTPM: 99.5
Sample A Female 108.0
Sample B Female 127.4
Sample C Male 99.5
Sample D Male 118.0

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