MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.7 nTPM
HPA Brain:12.3 nTPM
GTEx:128.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.7
2828 Female, age 72, unknown 10.4
1827 Male, age 72, unknown 10.3
1870 Female, age 42, unknown 10.3
2586 Male, age 75, left hemisphere 9.7
2411 Female, age 72, unknown 9.6
1833 Male, age 53, unknown 9.5
2019 Male, age 18, unknown 9.5
1830 Male, age 51, unknown 9.4
2219 Male, age 76, both hemispheres 9.0
2666 Male, age 74, left hemisphere 8.7
Dorsal raphe nucleus
nTPM: 10.6
2047 Male, age 72, unknown 12.1
1828 Male, age 53, unknown 11.5
2016 Female, age 72, unknown 9.9
2750 Male, age 76, both hemispheres 9.7
2298 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 11.1
1890 Male, age 53, unknown 12.3
2849 Male, age 72, unknown 11.9
1848 Female, age 42, unknown 10.8
2097 Female, age 72, unknown 9.6
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Periaquaductal grey, anterior
nTPM: 10.6
1947 Male, age 18, unknown 11.4
2502 Female, age 75, unknown 10.3
1795 Male, age 51, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 12.0
1840 Male, age 53, unknown 14.9
2850 Male, age 76, both hemispheres 12.8
2464 Female, age 72, unknown 11.4
1831 Male, age 72, unknown 8.9
Periaquaductal grey, lateral
nTPM: 12.3
2272 Male, age 74, both hemispheres 12.9
2140 Male, age 76, both hemispheres 12.6
2053 Male, age 18, unknown 11.3
Pretectal area
nTPM: 10.5
2273 Male, age 74, both hemispheres 13.1
2316 Male, age 76, right hemisphere 11.1
2825 Male, age 18, unknown 11.1
2667 Female, age 75, unknown 10.9
1817 Female, age 42, unknown 10.4
1944 Female, age 72, unknown 10.3
2407 Male, age 75, both hemispheres 10.2
1815 Male, age 53, unknown 9.7
2007 Male, age 72, unknown 9.7
2224 Female, age 72, unknown 9.6
1816 Male, age 51, unknown 8.9
Red nucleus
nTPM: 9.7
1821 Female, age 72, unknown 10.7
2769 Male, age 72, unknown 10.4
1865 Male, age 51, unknown 9.9
1954 Female, age 42, unknown 9.9
2725 Female, age 75, unknown 9.8
2227 Male, age 72, unknown 9.7
2588 Male, age 74, left hemisphere 9.7
2503 Female, age 72, unknown 9.6
2584 Male, age 75, left hemisphere 9.5
2785 Male, age 18, unknown 9.3
1904 Male, age 53, unknown 9.2
2823 Male, age 76, right hemisphere 9.0
Substantia nigra
nTPM: 11.3
2241 Male, age 72, unknown 13.2
1851 Male, age 51, unknown 12.7
2409 Female, age 72, unknown 12.7
2665 Male, age 74, both hemispheres 12.2
2699 Male, age 18, unknown 12.2
2590 Female, age 75, unknown 11.1
2583 Male, age 75, right hemisphere 10.2
1941 Male, age 53, unknown 10.0
1916 Female, age 42, unknown 9.9
1889 Female, age 72, unknown 9.0
Superior colliculus
nTPM: 10.6
2587 Male, age 74, left hemisphere 12.8
2664 Male, age 75, both hemispheres 11.5
1796 Male, age 53, unknown 11.1
1913 Female, age 42, unknown 10.8
1895 Male, age 76, right hemisphere 10.7
1839 Male, age 51, unknown 10.5
2668 Female, age 75, unknown 10.5
2261 Male, age 18, unknown 9.6
2087 Female, age 72, unknown 9.4
1995 Male, age 72, unknown 9.1
Ventral tegmental area
nTPM: 9.5
1942 Male, age 51, unknown 10.4
1915 Female, age 42, unknown 9.9
2223 Female, age 72, unknown 9.9
2218 Male, age 76, both hemispheres 9.8
2410 Female, age 72, unknown 9.6
2021 Male, age 53, unknown 7.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 128.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.7
Samples: 139

Max nTPM: 353.8
Min nTPM: 0.0
Std nTPM: 87.4
Median nTPM: 147.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 353.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 334.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 309.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 270.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 255.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 254.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 252.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 242.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 241.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 236.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 226.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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