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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:226.0 nTPM
HPA Brain:51.0 nTPM
GTEx:226.0 nTPM
FANTOM5:324.1 Scaled Tags Per Million
Pig:165.0 nTPM
Mouse:37.7 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.0
Sample id Sample description nTPM
Amygdala
nTPM: 51.0
2514 Male, age 75, right hemisphere 72.5
2695 Female, age 67, right hemisphere 54.3
1987 Female, age 91, left hemisphere 50.4
2814 Male, age 76, right hemisphere 42.4
2517 Female, age 94, left hemisphere 35.3
Basal amygdala
nTPM: 38.3
2609 Male, age 75, right hemisphere 47.3
2110 Male, age 80, left hemisphere 46.9
1955 Male, age 76, both hemispheres 40.4
2243 Female, age 91, right hemisphere 36.3
2827 Female, age 67, right hemisphere 30.8
2685 Female, age 94, left hemisphere 28.2
Central amygdala
nTPM: 42.4
2826 Female, age 94, left hemisphere 58.9
2701 Female, age 91, right hemisphere 39.7
2239 Male, age 80, left hemisphere 39.5
1905 Male, age 76, both hemispheres 38.9
2515 Male, age 75, right hemisphere 35.1
Corticomedial amygdala
nTPM: 42.7
2428 Male, age 75, right hemisphere 53.6
2829 Male, age 80, left hemisphere 45.6
2242 Female, age 91, right hemisphere 43.5
2429 Female, age 94, left hemisphere 41.6
2240 Male, age 76, both hemispheres 40.3
2535 Female, age 67, right hemisphere 31.3
Lateral amygdala
nTPM: 39.2
2516 Male, age 75, right hemisphere 45.7
2534 Female, age 94, left hemisphere 45.2
1883 Male, age 76, both hemispheres 41.6
2256 Male, age 80, left hemisphere 36.2
2830 Female, age 67, right hemisphere 35.6
2255 Female, age 91, right hemisphere 30.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 226.0
Samples: 152

Max nTPM: 908.8
Min nTPM: 82.0
Std nTPM: 116.5
Median nTPM: 192.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 908.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 725.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 616.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 532.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 527.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 507.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 495.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 442.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 415.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 381.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 380.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 380.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 369.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 362.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 353.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 349.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 344.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 340.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 339.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 338.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 336.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 335.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 314.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 310.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 296.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 293.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 293.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 292.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 288.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 288.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 284.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 283.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 281.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 278.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 277.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 263.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 262.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 258.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 255.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 254.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 252.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 249.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 247.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 245.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 242.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 240.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 239.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 239.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 237.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 236.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 231.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 230.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 228.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 227.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 226.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 222.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 220.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 218.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 217.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 217.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 216.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 215.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 213.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 212.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 210.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 210.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 209.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 207.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 205.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 205.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 201.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 201.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 198.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 196.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 196.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 192.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 192.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 190.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 190.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 189.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 188.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 187.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 187.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 187.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 185.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 184.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 184.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 183.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 181.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 180.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 180.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 178.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 177.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 176.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 174.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 171.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 171.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 166.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 165.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 164.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 164.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 163.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 162.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 161.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 160.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 159.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 158.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 156.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 154.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 153.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 152.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 151.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 150.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 150.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 149.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 149.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 149.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 148.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 146.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 142.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 142.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 139.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 138.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 136.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 131.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 131.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 126.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 117.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 112.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 110.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 107.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 107.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 103.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 97.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 93.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 91.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

324.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 324.1
FF:10151-102I7 76 years, female 324.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.0
Pig sample Sample description nTPM
Amygdala
nTPM: 165.0
Samples: 4

Max nTPM: 178.1
Min nTPM: 134.1
Sample A Female 174.5
Sample B Female 178.1
Sample C Male 173.4
Sample D Male 134.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 37.7
Samples: 4

Max nTPM: 43.7
Min nTPM: 34.0
Sample A Male 34.0
Sample B Male 38.5
Sample C Female 43.7
Sample D Female 34.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
69873409 Antisense, RP_050512_01_B12, Mouse strain C57BL/6J (56 days, male) 2.0

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