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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:231.5 nTPM
HPA Brain:94.9 nTPM
GTEx:231.5 nTPM
FANTOM5:17.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 53.3
1981 Female, age 72, midline 76.1
2565 Male, age 75, midline 61.1
2048 Male, age 55, midline 54.2
2816 Male, age 47, midline 42.8
2194 Female, age 79, both hemispheres 32.5
Cervical spinal cord, dorsal horn
nTPM: 66.6
2069 Male, age 47, both hemispheres 104.8
1877 Male, age 55, unknown 92.9
2173 Female, age 72, unknown 75.8
2721 Male, age 90, both hemispheres 71.5
2296 Male, age 66, both hemispheres 27.9
2297 Male, age 75, both hemispheres 26.8
Cervical spinal cord, ventral horn
nTPM: 94.9
2098 Female, age 72, unknown 202.7
2809 Male, age 90, both hemispheres 131.9
2295 Male, age 66, both hemispheres 99.2
2480 Male, age 75, both hemispheres 62.6
2068 Male, age 55, unknown 47.0
2820 Female, age 79, both hemispheres 25.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 231.5
Samples: 159

Max nTPM: 5178.2
Min nTPM: 21.3
Std nTPM: 439.2
Median nTPM: 150.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 5178.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1221.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1138.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1116.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 993.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 898.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 660.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 583.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 559.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 512.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 492.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 421.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 403.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 384.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 382.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 373.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 369.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 348.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 320.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 318.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 309.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 308.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 306.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 305.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 295.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 294.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 292.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 291.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 287.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 281.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 278.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 272.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 270.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 265.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 261.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 259.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 257.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 253.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 251.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 238.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 235.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 232.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 230.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 230.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 229.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 226.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 226.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 223.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 216.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 215.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 212.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 208.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 194.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 187.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 186.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 182.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 181.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 180.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 178.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 176.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 173.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 173.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 173.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 172.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 171.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 170.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 170.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 169.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 169.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 168.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 165.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 162.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 160.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 160.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 159.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 159.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 153.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 150.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 148.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 146.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 146.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 144.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 140.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 140.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 139.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 137.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 134.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 134.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 134.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 133.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 130.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 130.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 127.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 127.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 125.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 122.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 120.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 119.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 119.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 117.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 113.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 112.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 107.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 106.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 102.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 98.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 96.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 94.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 94.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 94.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 91.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 90.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 90.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 89.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 89.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 88.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 88.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 84.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 83.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 82.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 79.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 78.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 77.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 74.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 73.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 73.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 73.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 73.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 72.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 72.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 71.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 71.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 69.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 67.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 64.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 62.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 56.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 51.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 49.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 49.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 48.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 47.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 46.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 45.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 44.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 42.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 41.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 37.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 37.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 35.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 32.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 27.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 27.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 21.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.9
FF:10159-103A6 76 years, female 19.5
FF:10181-103D1 60 years, female 16.3

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