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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
182.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 87.0
1984
Male, age 76, both hemispheres
99.4
2301
Female, age 85, both hemispheres
98.4
2188
Female, age 91, both hemispheres
84.8
2090
Male, age 80, both hemispheres
65.4
Dorsal cochlear nucleus nTPM: 58.2
2187
Female, age 91, both hemispheres
76.0
2058
Male, age 76, both hemispheres
60.3
2802
Male, age 74, right hemisphere
57.2
2370
Male, age 61, both hemispheres
50.1
2378
Male, age 80, both hemispheres
47.2
Dorsal tegmental nucleus nTPM: 67.6
2083
Male, age 80, both hemispheres
73.4
1936
Male, age 76, left hemisphere
69.9
2326
Male, age 74, both hemispheres
65.9
2358
Male, age 61, both hemispheres
61.0
Dorsolateral tegmental area nTPM: 65.8
2360
Male, age 74, both hemispheres
85.2
2141
Male, age 76, both hemispheres
82.9
2654
Male, age 80, both hemispheres
67.4
2751
Female, age 85, both hemispheres
60.5
2337
Male, age 61, both hemispheres
33.0
Kolliker-Fuse nucleus nTPM: 92.5
2793
Female, age 91, left hemisphere
106.6
2315
Male, age 76, right hemisphere
99.8
2163
Male, age 80, both hemispheres
71.3
Lateral lemniscal nuclei nTPM: 157.6
2169
Male, age 76, both hemispheres
190.8
2036
Male, age 80, both hemispheres
173.0
2453
Male, age 74, right hemisphere
160.7
2746
Female, age 85, left hemisphere
157.7
2320
Female, age 91, left hemisphere
105.6
Lateral parabrachial nucleus nTPM: 104.8
2139
Female, age 85, right hemisphere
186.1
2013
Male, age 80, both hemispheres
99.0
2790
Male, age 61, both hemispheres
74.5
2792
Male, age 76, both hemispheres
59.6
Lateral vestibular nucleus nTPM: 65.7
2184
Male, age 76, both hemispheres
71.8
2311
Male, age 80, both hemispheres
59.6
Locus coeruleus nTPM: 86.4
2123
Female, age 91, both hemispheres
105.6
2720
Male, age 74, both hemispheres
95.8
2014
Male, age 55, unknown
90.1
1980
Male, age 76, both hemispheres
81.7
2162
Male, age 80, both hemispheres
79.9
2788
Male, age 74, unknown
78.8
2317
Female, age 72, unknown
73.0
Medial parabrachial nucleus nTPM: 75.7
2854
Male, age 80, both hemispheres
110.4
2170
Female, age 91, both hemispheres
70.4
2156
Male, age 61, both hemispheres
67.6
2786
Male, age 76, both hemispheres
66.1
2463
Female, age 85, right hemisphere
64.2
Medial periolivary nuclei nTPM: 147.3
2171
Female, age 85, both hemispheres
218.8
2063
Male, age 76, both hemispheres
189.5
2791
Male, age 74, right hemisphere
124.9
2458
Female, age 91, both hemispheres
104.1
2081
Male, age 80, both hemispheres
99.1
Motor facial nucleus nTPM: 147.5
2062
Male, age 76, both hemispheres
205.0
2327
Male, age 80, both hemispheres
171.2
2697
Female, age 85, both hemispheres
159.1
2365
Male, age 74, right hemisphere
147.7
2795
Female, age 91, both hemispheres
121.0
2126
Male, age 61, both hemispheres
81.2
Motor trigeminal nucleus nTPM: 95.9
2079
Male, age 80, both hemispheres
151.7
2560
Male, age 74, both hemispheres
114.3
2321
Female, age 91, both hemispheres
85.0
2335
Male, age 61, both hemispheres
69.0
2309
Male, age 76, both hemispheres
59.4
Nuclei of the trapezoid body nTPM: 181.2
2159
Male, age 61, both hemispheres
237.2
2735
Female, age 85, both hemispheres
226.3
1983
Male, age 76, both hemispheres
183.7
2166
Male, age 80, both hemispheres
138.2
2368
Female, age 91, both hemispheres
120.6
Nucleus raphe magnus nTPM: 182.7
2160
Male, age 61, both hemispheres
256.1
2172
Female, age 85, both hemispheres
250.8
2455
Male, age 74, both hemispheres
182.6
2328
Male, age 80, both hemispheres
151.7
2051
Male, age 76, both hemispheres
137.3
2459
Female, age 91, both hemispheres
117.7
Paramedian reticular nucleus nTPM: 87.8
2050
Female, age 85, both hemispheres
158.8
2313
Male, age 61, both hemispheres
73.1
2057
Male, age 80, both hemispheres
66.1
2052
Male, age 76, both hemispheres
53.3
Pedunculopontine tegmental nucleus nTPM: 76.0
1921
Female, age 85, both hemispheres
87.5
2338
Male, age 61, both hemispheres
70.7
2334
Male, age 80, both hemispheres
69.7
Pontine nuclei nTPM: 157.6
2787
Female, age 85, both hemispheres
243.2
2727
Male, age 61, right hemisphere
195.9
1863
Male, age 55, unknown
195.3
1968
Male, age 76, left hemisphere
163.8
2109
Female, age 72, unknown
151.7
2454
Male, age 74, left hemisphere
113.8
2115
Male, age 80, left hemisphere
111.8
2319
Female, age 91, both hemispheres
85.5
Pontine raphe nucleus nTPM: 119.2
2122
Female, age 85, midline
164.6
2853
Male, age 76, midline
73.7
Posteroventral cochlear nucleus nTPM: 60.7
2752
Female, age 85, both hemispheres
99.4
2070
Male, age 76, both hemispheres
69.6
2341
Male, age 80, both hemispheres
47.8
2371
Male, age 61, both hemispheres
47.3
2135
Female, age 91, both hemispheres
39.4
Principal sensory trigeminal nucleus nTPM: 139.7
2158
Male, age 61, both hemispheres
225.7
2008
Male, age 80, left hemisphere
169.6
2367
Female, age 91, left hemisphere
99.3
2324
Male, age 76, both hemispheres
64.2
Reticular pontine nucleus, caudal nTPM: 117.3
2332
Male, age 80, right hemisphere
171.6
2092
Male, age 76, both hemispheres
136.8
2457
Female, age 91, both hemispheres
101.5
2559
Male, age 74, both hemispheres
59.4
Reticular pontine nucleus, oral nTPM: 99.3
2012
Female, age 85, both hemispheres
156.6
2361
Male, age 74, both hemispheres
127.1
2366
Female, age 91, both hemispheres
94.1
1939
Male, age 80, both hemispheres
61.5
2167
Male, age 76, both hemispheres
57.1
Reticulotegmental nucleus nTPM: 91.2
2325
Male, age 76, both hemispheres
124.7
2333
Male, age 80, both hemispheres
87.3
2452
Male, age 74, both hemispheres
78.5
2322
Female, age 91, both hemispheres
74.3
Spinal trigeminal nucleus, oral nTPM: 72.8
2737
Female, age 85, both hemispheres
85.6
2164
Male, age 80, both hemispheres
71.1
1978
Male, age 76, both hemispheres
61.9
Subcoeruleus area nTPM: 96.4
2089
Male, age 76, left hemisphere
155.7
1958
Male, age 80, both hemispheres
119.0
2323
Female, age 91, left hemisphere
88.1
2451
Male, age 74, both hemispheres
65.1
2369
Female, age 85, left hemisphere
54.0
Superior olive nTPM: 148.9
1875
Female, age 85, both hemispheres
213.0
2329
Male, age 80, right hemisphere
143.2
2020
Male, age 76, both hemispheres
140.9
2364
Male, age 74, right hemisphere
127.1
2561
Female, age 91, both hemispheres
120.4
Ventral periolivary nuclei nTPM: 164.4
2130
Female, age 85, both hemispheres
219.5
2165
Male, age 80, both hemispheres
177.9
2794
Female, age 91, left hemisphere
133.2
2023
Male, age 76, both hemispheres
127.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 118.9
2449
Male, age 74, both hemispheres
164.9
1959
Male, age 76, both hemispheres
153.8
2161
Male, age 80, both hemispheres
131.4
2840
Female, age 85, both hemispheres
113.5
2456
Female, age 91, both hemispheres
94.8
2359
Male, age 61, both hemispheres
55.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.5
Pig sample
Sample description
nTPM
Pons nTPM: 89.5
Samples: 4
Max nTPM: 141.9
Min nTPM: 59.0
Sample A
Female
141.9
Sample B
Female
79.4
Sample C
Male
77.8
Sample D
Male
59.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
