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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:279.2 nTPM
FANTOM5:127.4 Scaled Tags Per Million
Pig:290.5 nTPM
Allen mouse:16.0 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.2
Sample id Sample description nTPM
Area postrema
nTPM: 279.2
2799 Male, age 61, both hemispheres 320.5
2306 Male, age 80, both hemispheres 280.6
2054 Male, age 76, both hemispheres 236.4
Dorsal medullary reticular nucleus
nTPM: 224.0
2373 Male, age 61, both hemispheres 251.3
2040 Female, age 85, both hemispheres 230.9
2088 Male, age 76, both hemispheres 189.9
Dorsal motor vagal complex
nTPM: 258.8
2643 Male, age 74, both hemispheres 346.3
2797 Male, age 61, both hemispheres 343.8
2844 Male, age 55, unknown 268.8
2133 Female, age 91, both hemispheres 233.9
2813 Female, age 72, unknown 231.5
2807 Female, age 85, both hemispheres 230.8
2000 Male, age 74, unknown 212.2
2185 Male, age 76, both hemispheres 202.8
Gigantocellular reticular nuclei, medullary
nTPM: 216.9
2314 Male, age 61, both hemispheres 279.1
1876 Female, age 85, both hemispheres 223.2
2022 Male, age 76, right hemisphere 217.7
2310 Male, age 80, both hemispheres 214.6
2387 Female, age 91, both hemispheres 196.0
2462 Male, age 74, both hemispheres 170.4
Gigantocellular reticular nuclei, pars
nTPM: 208.4
2084 Female, age 85, both hemispheres 237.6
2336 Male, age 61, both hemispheres 231.2
2706 Male, age 80, both hemispheres 198.5
2330 Male, age 80, both hemispheres 188.7
2168 Male, age 76, both hemispheres 186.2
Inferior olive
nTPM: 243.3
2563 Male, age 74, both hemispheres 266.2
2178 Male, age 61, both hemispheres 259.3
2628 Female, age 91, both hemispheres 258.1
2085 Female, age 85, both hemispheres 224.9
2379 Male, age 80, both hemispheres 208.0
Lateral medullary reticular nucleus
nTPM: 247.4
2852 Male, age 80, both hemispheres 283.6
2374 Male, age 61, both hemispheres 266.4
2804 Female, age 91, both hemispheres 255.5
2190 Female, age 85, both hemispheres 242.9
2044 Male, age 76, both hemispheres 232.8
2305 Male, age 74, both hemispheres 203.4
Medial olivary nucleus
nTPM: 274.3
1943 Male, age 61, both hemispheres 295.5
1962 Male, age 76, both hemispheres 284.9
2851 Male, age 80, both hemispheres 269.3
2138 Female, age 91, both hemispheres 247.5
Medial vestibular nucleus
nTPM: 230.7
2803 Female, age 91, both hemispheres 271.4
2624 Male, age 61, both hemispheres 256.7
2801 Male, age 74, both hemispheres 233.5
2743 Female, age 85, both hemispheres 210.2
2093 Male, age 80, both hemispheres 207.9
2134 Male, age 76, both hemispheres 204.3
Motor hypoglossal nucleus
nTPM: 233.0
2182 Male, age 80, both hemispheres 281.4
2132 Female, age 85, both hemispheres 251.3
2125 Female, age 91, both hemispheres 243.1
2277 Male, age 76, both hemispheres 207.9
2461 Male, age 61, both hemispheres 181.2
Nucleus ambiguus
nTPM: 228.1
2071 Male, age 76, both hemispheres 250.8
2096 Female, age 85, both hemispheres 205.4
Nucleus cuneatus
nTPM: 220.3
2564 Male, age 74, both hemispheres 258.1
2805 Female, age 91, both hemispheres 254.8
2808 Female, age 85, both hemispheres 253.1
2562 Male, age 61, both hemispheres 243.8
2381 Male, age 80, both hemispheres 223.0
2380 Male, age 80, both hemispheres 220.4
2376 Male, age 61, both hemispheres 211.3
2131 Male, age 76, both hemispheres 162.1
2100 Male, age 76, both hemispheres 155.9
Nucleus gracilis
nTPM: 250.9
2627 Male, age 74, both hemispheres 268.9
2382 Male, age 80, both hemispheres 261.2
2299 Female, age 85, both hemispheres 222.6
Nucleus raphe obscurus
nTPM: 259.0
2800 Male, age 61, midline 265.2
2142 Male, age 76, midline 259.1
2845 Female, age 85, midline 252.6
Nucleus raphe pallidus
nTPM: 274.6
1924 Male, age 61, midline 333.8
2183 Male, age 80, midline 269.1
2145 Male, age 76, midline 220.9
Nucleus tractus solitarii
nTPM: 211.5
2191 Female, age 85, both hemispheres 238.8
2656 Male, age 76, both hemispheres 224.1
2307 Male, age 80, both hemispheres 203.6
2144 Female, age 91, right hemisphere 179.4
Parvicellular reticular nuclei
nTPM: 223.9
2119 Male, age 80, both hemispheres 237.4
2095 Male, age 76, both hemispheres 233.2
2558 Male, age 74, both hemispheres 201.1
Parvicellular reticular nuclei, medullary
nTPM: 230.8
2189 Female, age 91, both hemispheres 246.1
2181 Male, age 80, left hemisphere 233.6
2091 Female, age 85, both hemispheres 212.6
Peritrigeminal nucleus
nTPM: 248.9
2067 Female, age 85, both hemispheres 282.3
2136 Male, age 76, both hemispheres 254.5
2179 Male, age 61, both hemispheres 210.0
Prepositus hypoglossal nucleus
nTPM: 239.6
2086 Male, age 80, both hemispheres 244.9
2855 Female, age 85, right hemisphere 234.4
Spinal trigeminal nucleus, caudal
nTPM: 227.1
2642 Male, age 74, both hemispheres 252.3
2312 Male, age 61, both hemispheres 246.3
2308 Male, age 80, both hemispheres 231.8
2390 Female, age 91, both hemispheres 216.9
2447 Male, age 76, both hemispheres 188.2
Spinal trigeminal nucleus, interpolar
nTPM: 238.6
2033 Male, age 80, both hemispheres 266.1
2389 Female, age 91, both hemispheres 249.4
2386 Female, age 85, both hemispheres 231.1
2066 Male, age 76, right hemisphere 223.2
2625 Male, age 61, both hemispheres 223.2
Spinal vestibular nucleus
nTPM: 256.3
2780 Male, age 80, both hemispheres 280.4
2796 Male, age 61, both hemispheres 263.2
2384 Male, age 74, both hemispheres 259.1
2748 Male, age 76, both hemispheres 255.9
2806 Female, age 85, both hemispheres 253.2
2186 Female, age 91, both hemispheres 225.7
Superior vestibular nucleus
nTPM: 259.3
2383 Male, age 74, both hemispheres 279.4
2015 Male, age 80, both hemispheres 263.3
2061 Male, age 76, both hemispheres 235.3
Ventral medullary reticular nucleus
nTPM: 229.4
2372 Male, age 61, both hemispheres 230.8
2060 Male, age 76, both hemispheres 228.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 244.8
2118 Male, age 80, both hemispheres 265.8
2180 Male, age 61, both hemispheres 248.0
1986 Male, age 76, both hemispheres 247.2
2302 Female, age 91, both hemispheres 237.6
2741 Female, age 85, both hemispheres 225.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 127.4
FF:10174-103C3 60 years, female 169.5
FF:10155-103A2 76 years, female 123.1
FF:10038-101F2 18-64 years, mixed 89.7

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 290.6
Samples: 4

Max nTPM: 350.6
Min nTPM: 231.0
Sample A Female 231.0
Sample B Female 246.0
Sample C Male 350.6
Sample D Male 334.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 16.0
68410536 Antisense, RP_041214_02_B01, Mouse strain C57BL/6J (56 days, male) 16.0

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