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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:83.0 nTPM
HPA Brain:31.6 nTPM
GTEx:83.0 nTPM
FANTOM5:23.1 Scaled Tags Per Million
Pig:16.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 31.0
1981 Female, age 72, midline 42.3
2816 Male, age 47, midline 30.8
2565 Male, age 75, midline 30.3
2194 Female, age 79, both hemispheres 26.8
2048 Male, age 55, midline 24.7
Cervical spinal cord, dorsal horn
nTPM: 31.6
2296 Male, age 66, both hemispheres 39.6
2173 Female, age 72, unknown 38.4
2069 Male, age 47, both hemispheres 36.2
1877 Male, age 55, unknown 26.2
2721 Male, age 90, both hemispheres 24.8
2297 Male, age 75, both hemispheres 24.5
Cervical spinal cord, ventral horn
nTPM: 27.0
2098 Female, age 72, unknown 34.9
2809 Male, age 90, both hemispheres 33.0
2068 Male, age 55, unknown 27.2
2480 Male, age 75, both hemispheres 25.3
2820 Female, age 79, both hemispheres 21.9
2295 Male, age 66, both hemispheres 19.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 83.0
Samples: 159

Max nTPM: 151.2
Min nTPM: 28.9
Std nTPM: 22.6
Median nTPM: 81.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 151.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 145.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 141.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 137.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 135.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 133.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 128.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 125.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 125.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 124.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 124.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 115.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 114.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 112.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 112.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 108.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 108.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 108.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 107.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 106.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 106.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 105.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 105.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 104.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 104.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 104.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 103.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 103.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 101.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 101.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 100.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 100.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 99.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 99.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 98.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 98.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 96.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 95.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 94.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 93.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 92.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 92.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 91.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 91.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 90.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 89.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 89.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 88.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 88.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 88.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 88.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 87.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 86.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 86.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 86.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 86.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 86.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 85.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 85.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 84.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 83.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 83.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 83.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 83.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 83.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 83.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 82.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 82.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 82.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 82.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 81.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 81.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 81.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 79.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 78.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 78.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 78.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 78.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 78.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 77.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 77.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 77.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 77.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 77.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 76.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 75.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 75.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 75.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 75.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 74.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 74.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 73.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 73.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 73.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 73.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 73.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 72.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 72.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 72.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 71.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 71.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 71.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 70.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 69.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 69.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 69.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 69.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 69.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 67.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 67.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 67.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 66.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 66.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 64.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 63.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 62.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 62.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 61.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 60.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 60.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 59.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 58.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 58.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 57.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 57.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 57.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 57.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 56.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 55.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 55.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 54.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 54.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 53.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 53.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 49.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 48.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 47.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 45.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 40.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 37.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 28.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 23.1
FF:10181-103D1 60 years, female 25.2
FF:10159-103A6 76 years, female 21.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 14.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 12.0
Sample A Female 16.7
Sample B Female 14.9
Sample C Male 13.8
Sample D Male 12.0
Ventral spinal cord
nTPM: 16.3
Samples: 4

Max nTPM: 19.3
Min nTPM: 12.8
Sample A Female 16.4
Sample B Female 16.6
Sample C Male 19.3
Sample D Male 12.8

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