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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:155.7 nTPM
HPA:102.2 nTPM
GTEx:155.7 nTPM
FANTOM5:201.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004832
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.2
overview
Male, age 65
Small intestine sample 232
nTPM: 86.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 125.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 101.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 94.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 155.7
Samples: 187

Max nTPM: 292.4
Min nTPM: 36.2
Std nTPM: 50.5
Median nTPM: 159.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 292.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 261.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 260.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 257.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 250.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 247.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 246.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 246.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 242.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 240.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 239.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 237.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 237.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 236.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 231.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 229.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 227.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 227.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 221.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 220.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 220.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 214.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 214.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 214.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 213.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 213.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 211.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 210.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 210.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 205.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 203.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 202.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 202.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 199.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 199.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 199.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 198.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 198.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 197.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 196.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 196.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 194.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 192.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 192.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 190.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 190.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 189.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 189.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 188.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 188.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 188.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 187.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 187.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 186.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 185.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 185.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 183.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 182.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 182.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 181.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 181.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 181.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 178.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 178.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 176.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 176.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 174.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 174.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 174.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 173.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 173.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 172.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 172.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 170.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 169.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 169.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 168.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 168.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 167.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 167.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 166.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 164.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 164.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 163.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 163.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 163.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 162.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 161.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 161.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 161.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 161.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 160.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 159.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 159.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 158.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 158.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 158.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 158.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 157.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 157.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 155.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 151.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 151.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 151.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 150.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 149.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 148.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 146.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 145.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 145.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 144.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 144.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 142.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 141.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 141.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 141.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 139.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 137.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 137.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 134.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 134.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 133.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 132.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 131.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 130.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 129.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 128.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 127.6
GTEX-1192X-2526-SM-59868 50-59 years, male 126.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 126.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 125.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 125.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 124.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 123.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 123.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 121.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 121.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 120.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 120.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 119.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 119.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 118.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 118.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 117.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 116.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 116.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 113.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 113.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 112.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 111.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 110.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 108.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 108.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 107.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 104.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 103.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 101.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 100.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 99.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 98.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 97.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 96.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 96.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 95.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 95.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 94.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 94.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 93.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 88.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 87.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 85.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 81.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 80.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 80.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 78.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 76.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 72.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 70.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 66.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 63.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 61.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 59.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 56.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 55.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 53.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 48.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 36.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

201.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 201.6
FF:10024-101D6 15,40,85 years, mixed 201.6

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