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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:113.3 nTPM
HPA Brain:155.0 nTPM
GTEx:113.3 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:40.0 nTPM
Mouse:60.8 nTPM
Allen mouse:14.4 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.0
Sample id Sample description nTPM
Amygdala
nTPM: 89.3
2517 Female, age 94, left hemisphere 129.5
1987 Female, age 91, left hemisphere 118.2
2514 Male, age 75, right hemisphere 82.8
2695 Female, age 67, right hemisphere 65.9
2814 Male, age 76, right hemisphere 50.1
Basal amygdala
nTPM: 155.0
2827 Female, age 67, right hemisphere 233.0
2243 Female, age 91, right hemisphere 185.4
2685 Female, age 94, left hemisphere 168.7
2110 Male, age 80, left hemisphere 129.4
2609 Male, age 75, right hemisphere 126.0
1955 Male, age 76, both hemispheres 87.5
Central amygdala
nTPM: 111.6
2826 Female, age 94, left hemisphere 147.0
2515 Male, age 75, right hemisphere 117.7
2239 Male, age 80, left hemisphere 115.3
2701 Female, age 91, right hemisphere 109.8
1905 Male, age 76, both hemispheres 68.3
Corticomedial amygdala
nTPM: 152.8
2535 Female, age 67, right hemisphere 240.8
2242 Female, age 91, right hemisphere 194.6
2829 Male, age 80, left hemisphere 161.4
2429 Female, age 94, left hemisphere 126.1
2428 Male, age 75, right hemisphere 106.2
2240 Male, age 76, both hemispheres 87.8
Lateral amygdala
nTPM: 123.5
2256 Male, age 80, left hemisphere 159.9
2830 Female, age 67, right hemisphere 149.9
2534 Female, age 94, left hemisphere 139.7
2255 Female, age 91, right hemisphere 134.3
2516 Male, age 75, right hemisphere 90.8
1883 Male, age 76, both hemispheres 66.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 113.3
Samples: 152

Max nTPM: 242.8
Min nTPM: 23.7
Std nTPM: 38.6
Median nTPM: 109.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 242.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 233.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 201.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 197.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 197.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 190.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 181.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 178.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 178.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 173.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 172.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 170.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 169.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 168.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 165.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 164.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 162.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 160.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 159.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 158.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 158.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 156.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 151.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 145.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 145.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 144.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 140.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 140.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 139.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 139.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 138.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 137.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 136.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 135.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 134.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 133.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 133.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 133.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 130.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 128.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 128.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 127.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 127.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 124.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 124.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 124.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 123.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 123.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 122.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 121.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 120.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 120.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 117.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 117.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 117.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 116.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 114.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 113.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 111.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 111.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 110.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 110.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 108.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 108.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 108.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 108.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 106.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 106.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 106.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 103.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 103.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 103.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 102.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 102.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 102.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 102.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 101.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 100.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 99.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 99.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 98.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 98.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 98.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 96.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 95.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 95.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 94.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 94.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 92.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 90.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 89.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 88.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 88.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 87.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 86.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 83.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 81.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 79.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 79.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 79.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 77.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 77.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 72.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 72.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 72.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 70.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 69.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 68.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 68.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 55.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 43.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 42.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 41.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 38.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 38.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 35.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 23.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 47.4
FF:10151-102I7 76 years, female 47.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.0
Pig sample Sample description nTPM
Amygdala
nTPM: 40.0
Samples: 4

Max nTPM: 54.6
Min nTPM: 30.6
Sample A Female 54.6
Sample B Female 30.6
Sample C Male 38.5
Sample D Male 36.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 60.8
Samples: 4

Max nTPM: 72.7
Min nTPM: 56.3
Sample A Male 56.8
Sample B Male 57.4
Sample C Female 72.7
Sample D Female 56.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.4
73817987 Antisense, RP_051214_01_B01, Mouse strain C57BL/6J (56 days, male) 14.9
68076537 Antisense, RP_040923_02_E08, Mouse strain C57BL/6J (56 days, male) 13.9

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