PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:97.3 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:17.8 nTPM
Allen mouse:4.9 Expression energy

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 97.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 51.4
1984 Male, age 76, both hemispheres 66.8
2090 Male, age 80, both hemispheres 50.1
2188 Female, age 91, both hemispheres 44.6
2301 Female, age 85, both hemispheres 43.9
Area postrema
nTPM: 73.5
2799 Male, age 61, both hemispheres 93.7
2306 Male, age 80, both hemispheres 68.0
2054 Male, age 76, both hemispheres 58.9
Dorsal cochlear nucleus
nTPM: 51.0
2378 Male, age 80, both hemispheres 56.0
2058 Male, age 76, both hemispheres 54.3
2802 Male, age 74, right hemisphere 51.4
2370 Male, age 61, both hemispheres 47.8
2187 Female, age 91, both hemispheres 45.4
Dorsal medullary reticular nucleus
nTPM: 50.1
2088 Male, age 76, both hemispheres 61.7
2373 Male, age 61, both hemispheres 50.3
2040 Female, age 85, both hemispheres 38.4
Dorsal motor vagal complex
nTPM: 70.5
2643 Male, age 74, both hemispheres 89.0
2797 Male, age 61, both hemispheres 81.4
2807 Female, age 85, both hemispheres 76.5
2844 Male, age 55, unknown 74.5
2813 Female, age 72, unknown 69.3
2185 Male, age 76, both hemispheres 63.2
2000 Male, age 74, unknown 55.3
2133 Female, age 91, both hemispheres 55.3
Dorsal tegmental nucleus
nTPM: 57.1
2358 Male, age 61, both hemispheres 63.1
1936 Male, age 76, left hemisphere 59.0
2326 Male, age 74, both hemispheres 56.4
2083 Male, age 80, both hemispheres 49.9
Dorsolateral tegmental area
nTPM: 67.4
2360 Male, age 74, both hemispheres 100.5
2337 Male, age 61, both hemispheres 74.4
2141 Male, age 76, both hemispheres 70.7
2654 Male, age 80, both hemispheres 50.0
2751 Female, age 85, both hemispheres 41.3
Gigantocellular reticular nuclei, medullary
nTPM: 54.2
2022 Male, age 76, right hemisphere 62.7
2462 Male, age 74, both hemispheres 61.7
2310 Male, age 80, both hemispheres 56.3
2314 Male, age 61, both hemispheres 54.1
2387 Female, age 91, both hemispheres 47.6
1876 Female, age 85, both hemispheres 43.0
Gigantocellular reticular nuclei, pars
nTPM: 55.9
2330 Male, age 80, both hemispheres 66.9
2706 Male, age 80, both hemispheres 66.2
2084 Female, age 85, both hemispheres 51.8
2336 Male, age 61, both hemispheres 48.8
2168 Male, age 76, both hemispheres 46.0
Inferior olive
nTPM: 60.8
2178 Male, age 61, both hemispheres 66.8
2085 Female, age 85, both hemispheres 63.0
2628 Female, age 91, both hemispheres 61.3
2379 Male, age 80, both hemispheres 56.8
2563 Male, age 74, both hemispheres 56.1
Kolliker-Fuse nucleus
nTPM: 53.4
2315 Male, age 76, right hemisphere 57.9
2163 Male, age 80, both hemispheres 53.4
2793 Female, age 91, left hemisphere 48.8
Lateral lemniscal nuclei
nTPM: 46.3
2169 Male, age 76, both hemispheres 48.5
2036 Male, age 80, both hemispheres 48.4
2320 Female, age 91, left hemisphere 48.0
2453 Male, age 74, right hemisphere 47.4
2746 Female, age 85, left hemisphere 38.9
Lateral medullary reticular nucleus
nTPM: 52.9
2804 Female, age 91, both hemispheres 64.9
2374 Male, age 61, both hemispheres 60.3
2852 Male, age 80, both hemispheres 56.9
2190 Female, age 85, both hemispheres 52.9
2044 Male, age 76, both hemispheres 42.9
2305 Male, age 74, both hemispheres 39.6
Lateral parabrachial nucleus
nTPM: 51.8
2790 Male, age 61, both hemispheres 67.6
2013 Male, age 80, both hemispheres 52.7
2792 Male, age 76, both hemispheres 47.0
2139 Female, age 85, right hemisphere 39.9
Lateral vestibular nucleus
nTPM: 58.6
2311 Male, age 80, both hemispheres 63.4
2184 Male, age 76, both hemispheres 53.8
Locus coeruleus
nTPM: 55.4
1980 Male, age 76, both hemispheres 69.6
2123 Female, age 91, both hemispheres 69.4
2317 Female, age 72, unknown 57.8
2162 Male, age 80, both hemispheres 53.5
2720 Male, age 74, both hemispheres 48.7
2014 Male, age 55, unknown 47.6
2788 Male, age 74, unknown 41.5
Medial olivary nucleus
nTPM: 53.9
2138 Female, age 91, both hemispheres 61.1
2851 Male, age 80, both hemispheres 58.5
1943 Male, age 61, both hemispheres 51.8
1962 Male, age 76, both hemispheres 44.3
Medial parabrachial nucleus
nTPM: 56.3
2156 Male, age 61, both hemispheres 68.4
2786 Male, age 76, both hemispheres 68.2
2463 Female, age 85, right hemisphere 52.6
2170 Female, age 91, both hemispheres 48.7
2854 Male, age 80, both hemispheres 43.4
Medial periolivary nuclei
nTPM: 47.5
2791 Male, age 74, right hemisphere 51.2
2171 Female, age 85, both hemispheres 50.7
2458 Female, age 91, both hemispheres 50.4
2081 Male, age 80, both hemispheres 45.3
2063 Male, age 76, both hemispheres 40.1
Medial vestibular nucleus
nTPM: 51.6
2743 Female, age 85, both hemispheres 69.9
2624 Male, age 61, both hemispheres 55.5
2134 Male, age 76, both hemispheres 53.0
2093 Male, age 80, both hemispheres 49.4
2801 Male, age 74, both hemispheres 41.0
2803 Female, age 91, both hemispheres 40.8
Motor facial nucleus
nTPM: 48.2
2795 Female, age 91, both hemispheres 59.5
2327 Male, age 80, both hemispheres 53.1
2062 Male, age 76, both hemispheres 47.4
2126 Male, age 61, both hemispheres 43.4
2365 Male, age 74, right hemisphere 43.2
2697 Female, age 85, both hemispheres 42.7
Motor hypoglossal nucleus
nTPM: 56.9
2277 Male, age 76, both hemispheres 85.8
2182 Male, age 80, both hemispheres 63.8
2461 Male, age 61, both hemispheres 46.8
2125 Female, age 91, both hemispheres 45.4
2132 Female, age 85, both hemispheres 42.8
Motor trigeminal nucleus
nTPM: 53.7
2335 Male, age 61, both hemispheres 60.7
2321 Female, age 91, both hemispheres 54.1
2560 Male, age 74, both hemispheres 53.3
2079 Male, age 80, both hemispheres 51.2
2309 Male, age 76, both hemispheres 49.4
Nuclei of the trapezoid body
nTPM: 46.4
2368 Female, age 91, both hemispheres 52.5
2166 Male, age 80, both hemispheres 52.3
2735 Female, age 85, both hemispheres 44.0
1983 Male, age 76, both hemispheres 42.7
2159 Male, age 61, both hemispheres 40.3
Nucleus ambiguus
nTPM: 62.0
2096 Female, age 85, both hemispheres 73.0
2071 Male, age 76, both hemispheres 51.1
Nucleus cuneatus
nTPM: 56.2
2564 Male, age 74, both hemispheres 64.9
2131 Male, age 76, both hemispheres 63.2
2381 Male, age 80, both hemispheres 61.9
2562 Male, age 61, both hemispheres 61.7
2805 Female, age 91, both hemispheres 60.7
2100 Male, age 76, both hemispheres 50.9
2376 Male, age 61, both hemispheres 49.6
2808 Female, age 85, both hemispheres 49.6
2380 Male, age 80, both hemispheres 43.3
Nucleus gracilis
nTPM: 71.7
2299 Female, age 85, both hemispheres 99.1
2382 Male, age 80, both hemispheres 61.5
2627 Male, age 74, both hemispheres 54.6
Nucleus raphe magnus
nTPM: 50.2
2459 Female, age 91, both hemispheres 58.2
2328 Male, age 80, both hemispheres 54.0
2172 Female, age 85, both hemispheres 50.9
2160 Male, age 61, both hemispheres 48.5
2455 Male, age 74, both hemispheres 45.4
2051 Male, age 76, both hemispheres 44.3
Nucleus raphe obscurus
nTPM: 48.0
2800 Male, age 61, midline 53.6
2845 Female, age 85, midline 45.4
2142 Male, age 76, midline 45.0
Nucleus raphe pallidus
nTPM: 56.8
1924 Male, age 61, midline 61.0
2183 Male, age 80, midline 61.0
2145 Male, age 76, midline 48.5
Nucleus tractus solitarii
nTPM: 97.3
2191 Female, age 85, both hemispheres 139.1
2307 Male, age 80, both hemispheres 115.7
2656 Male, age 76, both hemispheres 77.6
2144 Female, age 91, right hemisphere 57.0
Paramedian reticular nucleus
nTPM: 42.9
2313 Male, age 61, both hemispheres 50.5
2050 Female, age 85, both hemispheres 45.0
2057 Male, age 80, both hemispheres 40.1
2052 Male, age 76, both hemispheres 36.0
Parvicellular reticular nuclei
nTPM: 47.2
2558 Male, age 74, both hemispheres 52.3
2119 Male, age 80, both hemispheres 46.1
2095 Male, age 76, both hemispheres 43.4
Parvicellular reticular nuclei, medullary
nTPM: 60.2
2181 Male, age 80, left hemisphere 71.1
2091 Female, age 85, both hemispheres 58.8
2189 Female, age 91, both hemispheres 50.7
Pedunculopontine tegmental nucleus
nTPM: 51.3
1921 Female, age 85, both hemispheres 56.9
2334 Male, age 80, both hemispheres 48.6
2338 Male, age 61, both hemispheres 48.4
Peritrigeminal nucleus
nTPM: 48.9
2179 Male, age 61, both hemispheres 51.2
2067 Female, age 85, both hemispheres 50.3
2136 Male, age 76, both hemispheres 45.2
Pontine nuclei
nTPM: 43.0
2115 Male, age 80, left hemisphere 54.0
1968 Male, age 76, left hemisphere 50.0
2319 Female, age 91, both hemispheres 48.7
2787 Female, age 85, both hemispheres 47.4
2109 Female, age 72, unknown 38.5
2727 Male, age 61, right hemisphere 36.1
1863 Male, age 55, unknown 35.1
2454 Male, age 74, left hemisphere 33.7
Pontine raphe nucleus
nTPM: 49.3
2853 Male, age 76, midline 62.9
2122 Female, age 85, midline 35.7
Posteroventral cochlear nucleus
nTPM: 47.9
2752 Female, age 85, both hemispheres 53.4
2070 Male, age 76, both hemispheres 52.6
2371 Male, age 61, both hemispheres 51.5
2341 Male, age 80, both hemispheres 43.3
2135 Female, age 91, both hemispheres 38.4
Prepositus hypoglossal nucleus
nTPM: 67.9
2086 Male, age 80, both hemispheres 83.2
2855 Female, age 85, right hemisphere 52.6
Principal sensory trigeminal nucleus
nTPM: 52.1
2367 Female, age 91, left hemisphere 57.1
2324 Male, age 76, both hemispheres 54.7
2158 Male, age 61, both hemispheres 49.7
2008 Male, age 80, left hemisphere 46.8
Reticular pontine nucleus, caudal
nTPM: 45.7
2332 Male, age 80, right hemisphere 53.3
2559 Male, age 74, both hemispheres 47.7
2092 Male, age 76, both hemispheres 46.0
2457 Female, age 91, both hemispheres 35.9
Reticular pontine nucleus, oral
nTPM: 43.8
2167 Male, age 76, both hemispheres 51.1
2361 Male, age 74, both hemispheres 45.0
2366 Female, age 91, both hemispheres 43.1
1939 Male, age 80, both hemispheres 42.1
2012 Female, age 85, both hemispheres 37.8
Reticulotegmental nucleus
nTPM: 52.1
2333 Male, age 80, both hemispheres 56.1
2452 Male, age 74, both hemispheres 55.5
2325 Male, age 76, both hemispheres 49.9
2322 Female, age 91, both hemispheres 47.0
Spinal trigeminal nucleus, caudal
nTPM: 62.1
2308 Male, age 80, both hemispheres 74.8
2642 Male, age 74, both hemispheres 66.2
2447 Male, age 76, both hemispheres 61.3
2390 Female, age 91, both hemispheres 55.5
2312 Male, age 61, both hemispheres 52.8
Spinal trigeminal nucleus, interpolar
nTPM: 47.9
2386 Female, age 85, both hemispheres 57.4
2066 Male, age 76, right hemisphere 49.0
2033 Male, age 80, both hemispheres 45.7
2625 Male, age 61, both hemispheres 44.6
2389 Female, age 91, both hemispheres 42.9
Spinal trigeminal nucleus, oral
nTPM: 59.3
1978 Male, age 76, both hemispheres 75.6
2164 Male, age 80, both hemispheres 54.9
2737 Female, age 85, both hemispheres 47.4
Spinal vestibular nucleus
nTPM: 49.4
2780 Male, age 80, both hemispheres 58.3
2796 Male, age 61, both hemispheres 56.2
2384 Male, age 74, both hemispheres 51.5
2748 Male, age 76, both hemispheres 45.3
2186 Female, age 91, both hemispheres 43.1
2806 Female, age 85, both hemispheres 42.2
Subcoeruleus area
nTPM: 52.3
2451 Male, age 74, both hemispheres 65.5
2323 Female, age 91, left hemisphere 59.9
2089 Male, age 76, left hemisphere 53.3
1958 Male, age 80, both hemispheres 44.2
2369 Female, age 85, left hemisphere 38.9
Superior olive
nTPM: 48.3
2561 Female, age 91, both hemispheres 68.8
2329 Male, age 80, right hemisphere 53.7
1875 Female, age 85, both hemispheres 41.0
2364 Male, age 74, right hemisphere 39.5
2020 Male, age 76, both hemispheres 38.7
Superior vestibular nucleus
nTPM: 62.9
2383 Male, age 74, both hemispheres 67.9
2061 Male, age 76, both hemispheres 61.6
2015 Male, age 80, both hemispheres 59.2
Ventral medullary reticular nucleus
nTPM: 51.9
2372 Male, age 61, both hemispheres 54.8
2060 Male, age 76, both hemispheres 49.0
Ventral periolivary nuclei
nTPM: 50.3
2794 Female, age 91, left hemisphere 57.9
2165 Male, age 80, both hemispheres 52.5
2130 Female, age 85, both hemispheres 48.4
2023 Male, age 76, both hemispheres 42.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 52.7
2302 Female, age 91, both hemispheres 66.4
2118 Male, age 80, both hemispheres 56.5
2741 Female, age 85, both hemispheres 53.7
2180 Male, age 61, both hemispheres 50.7
1986 Male, age 76, both hemispheres 36.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 50.6
2161 Male, age 80, both hemispheres 58.9
2456 Female, age 91, both hemispheres 52.6
2449 Male, age 74, both hemispheres 52.4
1959 Male, age 76, both hemispheres 49.3
2359 Male, age 61, both hemispheres 45.8
2840 Female, age 85, both hemispheres 44.4

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 15.5
FF:10165-103B3 76 years, female 19.4
FF:10182-103D2 60 years, female 11.6
Medulla oblongata
Scaled Tags Per Million: 15.7
FF:10155-103A2 76 years, female 21.1
FF:10038-101F2 18-64 years, mixed 13.3
FF:10174-103C3 60 years, female 12.9
Pons
Scaled Tags Per Million: 9.6
FF:10033-101E6 18-54 years, mixed 9.6

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 25.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 22.1
Samples: 4

Max nTPM: 24.3
Min nTPM: 21.1
Sample A Female 21.8
Sample B Female 21.1
Sample C Male 24.3
Sample D Male 21.1
Pons
nTPM: 25.3
Samples: 4

Max nTPM: 32.3
Min nTPM: 21.5
Sample A Female 32.3
Sample B Female 24.1
Sample C Male 23.1
Sample D Male 21.5

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 17.8
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 17.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 14.6
Sample A Male 20.8
Sample B Male 16.1
Sample C Female 20.0
Sample D Female 14.6

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.3
73817987 Antisense, RP_051214_01_B01, Mouse strain C57BL/6J (56 days, male) 6.2
68076537 Antisense, RP_040923_02_E08, Mouse strain C57BL/6J (56 days, male) 2.4
Pons
Expression energy: 4.9
73817987 Antisense, RP_051214_01_B01, Mouse strain C57BL/6J (56 days, male) 6.1
68076537 Antisense, RP_040923_02_E08, Mouse strain C57BL/6J (56 days, male) 3.8

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