MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA Brain:59.7 nTPM
GTEx:23.6 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:261.9 nTPM
Allen mouse:14.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
2666 Male, age 74, left hemisphere 62.4
2219 Male, age 76, both hemispheres 55.9
1827 Male, age 72, unknown 53.6
2411 Female, age 72, unknown 52.4
1870 Female, age 42, unknown 39.5
2586 Male, age 75, left hemisphere 39.2
2019 Male, age 18, unknown 38.0
1833 Male, age 53, unknown 35.5
2828 Female, age 72, unknown 35.4
1830 Male, age 51, unknown 32.3
Dorsal raphe nucleus
nTPM: 46.1
2298 Female, age 72, unknown 56.1
1828 Male, age 53, unknown 51.7
2047 Male, age 72, unknown 49.6
2750 Male, age 76, both hemispheres 43.5
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 57.2
1848 Female, age 42, unknown 46.3
1890 Male, age 53, unknown 44.2
2849 Male, age 72, unknown 39.6
Median raphe nucleus
nTPM: 59.7
2220 Male, age 76, midline 59.7
Periaquaductal grey, anterior
nTPM: 52.6
1947 Male, age 18, unknown 57.1
1795 Male, age 51, unknown 53.1
2502 Female, age 75, unknown 47.6
Periaquaductal grey, dorsal
nTPM: 34.6
1840 Male, age 53, unknown 38.8
2464 Female, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 33.3
1831 Male, age 72, unknown 33.0
Periaquaductal grey, lateral
nTPM: 28.0
2053 Male, age 18, unknown 33.2
2140 Male, age 76, both hemispheres 28.7
2272 Male, age 74, both hemispheres 22.2
Pretectal area
nTPM: 48.6
1816 Male, age 51, unknown 74.4
1944 Female, age 72, unknown 73.6
2007 Male, age 72, unknown 61.3
2667 Female, age 75, unknown 59.8
1817 Female, age 42, unknown 58.8
1815 Male, age 53, unknown 47.6
2224 Female, age 72, unknown 46.8
2825 Male, age 18, unknown 40.4
2316 Male, age 76, right hemisphere 31.9
2407 Male, age 75, both hemispheres 22.3
2273 Male, age 74, both hemispheres 18.0
Red nucleus
nTPM: 35.1
1821 Female, age 72, unknown 55.3
1954 Female, age 42, unknown 40.7
2785 Male, age 18, unknown 37.0
2769 Male, age 72, unknown 36.3
2227 Male, age 72, unknown 36.1
2584 Male, age 75, left hemisphere 35.8
2503 Female, age 72, unknown 34.3
2823 Male, age 76, right hemisphere 33.1
1865 Male, age 51, unknown 31.8
1904 Male, age 53, unknown 31.8
2588 Male, age 74, left hemisphere 29.0
2725 Female, age 75, unknown 19.5
Substantia nigra
nTPM: 58.5
1916 Female, age 42, unknown 83.7
2665 Male, age 74, both hemispheres 82.7
1941 Male, age 53, unknown 63.1
1889 Female, age 72, unknown 61.9
1851 Male, age 51, unknown 61.0
2409 Female, age 72, unknown 59.7
2241 Male, age 72, unknown 57.0
2699 Male, age 18, unknown 42.2
2583 Male, age 75, right hemisphere 38.9
2590 Female, age 75, unknown 35.1
Superior colliculus
nTPM: 44.8
2668 Female, age 75, unknown 93.4
2087 Female, age 72, unknown 58.9
1796 Male, age 53, unknown 52.2
1895 Male, age 76, right hemisphere 49.5
2261 Male, age 18, unknown 48.9
1839 Male, age 51, unknown 39.6
1913 Female, age 42, unknown 29.6
2664 Male, age 75, both hemispheres 27.8
2587 Male, age 74, left hemisphere 24.1
1995 Male, age 72, unknown 23.5
Ventral tegmental area
nTPM: 53.9
2218 Male, age 76, both hemispheres 72.0
2410 Female, age 72, unknown 71.6
1915 Female, age 42, unknown 64.2
1942 Male, age 51, unknown 42.0
2223 Female, age 72, unknown 37.2
2021 Male, age 53, unknown 36.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 168.8
Min nTPM: 0.0
Std nTPM: 33.2
Median nTPM: 6.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 168.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 164.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 118.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 113.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 100.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 95.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 89.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 84.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 82.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 79.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.3
Samples: 4

Max nTPM: 80.5
Min nTPM: 16.7
Sample A Female 80.5
Sample B Female 34.6
Sample C Male 65.3
Sample D Male 16.7
Midbrain
nTPM: 65.7
Samples: 4

Max nTPM: 124.0
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 41.8
Sample C Male 124.0
Sample D Male 80.8
Periaqueductal gray
nTPM: 38.8
Samples: 3

Max nTPM: 52.4
Min nTPM: 29.7
Sample B Female 34.3
Sample C Male 52.4
Sample D Male 29.7
Superior colliculi
nTPM: 83.5
Samples: 4

Max nTPM: 128.8
Min nTPM: 44.9
Sample A Female 88.2
Sample B Female 44.9
Sample C Male 128.8
Sample D Male 72.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 261.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 261.9
Samples: 4

Max nTPM: 269.4
Min nTPM: 253.8
Sample A Male 264.0
Sample B Male 260.4
Sample C Female 253.8
Sample D Female 269.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
69113650 Antisense, RP_050316_02_E04, Mouse strain C57BL/6J (56 days, male) 14.4

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