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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:614.4 nTPM
HPA Brain:361.3 nTPM
GTEx:614.4 nTPM
FANTOM5:347.7 Scaled Tags Per Million
Pig:539.7 nTPM
Mouse:1058.1 nTPM
Allen mouse:23.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.3
Sample id Sample description nTPM
Amygdala
nTPM: 171.7
2517 Female, age 94, left hemisphere 204.6
1987 Female, age 91, left hemisphere 198.2
2514 Male, age 75, right hemisphere 189.4
2814 Male, age 76, right hemisphere 166.7
2695 Female, age 67, right hemisphere 99.6
Basal amygdala
nTPM: 318.4
2243 Female, age 91, right hemisphere 490.5
2110 Male, age 80, left hemisphere 310.1
2685 Female, age 94, left hemisphere 304.0
2609 Male, age 75, right hemisphere 283.6
2827 Female, age 67, right hemisphere 283.1
1955 Male, age 76, both hemispheres 239.1
Central amygdala
nTPM: 205.7
2826 Female, age 94, left hemisphere 298.0
2239 Male, age 80, left hemisphere 294.5
2515 Male, age 75, right hemisphere 186.7
1905 Male, age 76, both hemispheres 163.7
2701 Female, age 91, right hemisphere 85.3
Corticomedial amygdala
nTPM: 361.3
2829 Male, age 80, left hemisphere 541.7
2242 Female, age 91, right hemisphere 501.4
2535 Female, age 67, right hemisphere 308.5
2428 Male, age 75, right hemisphere 284.2
2429 Female, age 94, left hemisphere 278.1
2240 Male, age 76, both hemispheres 254.0
Lateral amygdala
nTPM: 223.2
2534 Female, age 94, left hemisphere 375.0
2256 Male, age 80, left hemisphere 242.0
2516 Male, age 75, right hemisphere 210.6
1883 Male, age 76, both hemispheres 201.3
2830 Female, age 67, right hemisphere 168.7
2255 Female, age 91, right hemisphere 141.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

614.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 614.4
Samples: 152

Max nTPM: 2036.9
Min nTPM: 24.7
Std nTPM: 289.3
Median nTPM: 575.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2036.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1565.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1337.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1276.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1255.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1222.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1218.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1179.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1101.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1094.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1060.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1040.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1026.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1008.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1004.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 994.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 939.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 932.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 924.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 924.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 924.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 900.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 894.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 888.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 881.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 866.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 857.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 857.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 856.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 831.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 814.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 812.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 789.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 784.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 773.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 757.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 743.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 731.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 728.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 706.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 701.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 699.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 698.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 697.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 693.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 689.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 684.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 682.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 678.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 677.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 666.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 664.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 660.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 658.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 658.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 656.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 654.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 654.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 649.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 647.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 644.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 642.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 640.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 632.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 624.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 624.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 613.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 602.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 599.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 597.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 596.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 591.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 584.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 583.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 579.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 576.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 574.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 573.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 566.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 560.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 560.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 549.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 549.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 547.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 547.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 545.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 543.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 538.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 536.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 536.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 533.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 532.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 525.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 522.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 518.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 516.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 515.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 506.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 498.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 495.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 482.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 481.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 478.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 475.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 471.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 460.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 459.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 450.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 444.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 436.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 422.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 411.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 401.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 400.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 393.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 391.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 387.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 381.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 377.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 365.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 363.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 360.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 359.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 358.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 351.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 347.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 343.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 341.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 337.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 334.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 331.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 330.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 324.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 321.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 319.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 317.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 315.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 309.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 290.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 283.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 282.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 282.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 258.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 249.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 244.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 234.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 212.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 211.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 189.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 183.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 151.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

347.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 347.7
FF:10151-102I7 76 years, female 347.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.7
Pig sample Sample description nTPM
Amygdala
nTPM: 539.8
Samples: 4

Max nTPM: 765.9
Min nTPM: 365.1
Sample A Female 765.9
Sample B Female 365.1
Sample C Male 538.3
Sample D Male 489.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1058.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1058.1
Samples: 4

Max nTPM: 1126.6
Min nTPM: 1016.4
Sample A Male 1016.4
Sample B Male 1026.5
Sample C Female 1126.6
Sample D Female 1062.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.5
760 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 23.5
761 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 18.0

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