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OLFM1
HPA
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  • OLFM1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

OLFM1
Synonyms AMY, NOE1, NOELIN, OlfA
Gene descriptioni

Full gene name according to HGNC.

Olfactomedin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband q34.3
Chromosome location (bp) 135075422 - 135121180
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000130558 (version 109)
Entrez gene 10439
HGNC HGNC:17187
UniProt Q99784 (UniProt - Evidence at protein level)
neXtProt NX_Q99784
GeneCards OLFM1
Antibodypedia OLFM1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Contributes to the regulation of axonal growth in the embryonic and adult central nervous system by inhibiting interactions between RTN4R and LINGO1. Inhibits RTN4R-mediated axon growth cone collapse (By similarity). May play an important role in regulating the production of neural crest cells by the neural tube (By similarity). May be required for normal responses to olfactory stimuli (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene product shares extensive sequence similarity with the rat neuronal olfactomedin-related ER localized protein. While the exact function of the encoded protein is not known, its abundant expression in brain suggests that it may have an essential role in nerve tissue. Several alternatively spliced transcripts encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
OLFM1-201
ENSP00000252854
ENST00000252854
Q99784
[Direct mapping] Noelin
Show all
Q6IMJ8
[Target identity:100%; Query identity:100%] NOELIN1_V1; Olfactomedin 1, isoform CRA_c
Show all
Transporters
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003190 [atrioventricular valve formation]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0023041 [neuronal signal transduction]
GO:0030424 [axon]
GO:0030516 [regulation of axon extension]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043065 [positive regulation of apoptotic process]
GO:0043204 [perikaryon]
GO:0044295 [axonal growth cone]
GO:0045202 [synapse]
GO:0060317 [cardiac epithelial to mesenchymal transition]
Show all
467 aa
54.1 kDa
Yes 0
OLFM1-202
ENSP00000277415
ENST00000277415
Q99784
[Direct mapping] Noelin
Show all
Q6IMJ7
[Target identity:100%; Query identity:100%] NOELIN1_V4; Olfactomedin 1, isoform CRA_d
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003190 [atrioventricular valve formation]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0023041 [neuronal signal transduction]
GO:0030424 [axon]
GO:0030516 [regulation of axon extension]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043065 [positive regulation of apoptotic process]
GO:0043204 [perikaryon]
GO:0044295 [axonal growth cone]
GO:0045202 [synapse]
GO:0060317 [cardiac epithelial to mesenchymal transition]
Show all
135 aa
15.9 kDa
Yes 0
OLFM1-203
ENSP00000340318
ENST00000339720
F8W870
[Direct mapping] Noelin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0007399 [nervous system development]
Show all
163 aa
18.7 kDa
No 0
OLFM1-204
ENSP00000360858
ENST00000371793
Q99784
[Direct mapping] Noelin
Show all
   MEMSAT3 predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003190 [atrioventricular valve formation]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0023041 [neuronal signal transduction]
GO:0030424 [axon]
GO:0030516 [regulation of axon extension]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043065 [positive regulation of apoptotic process]
GO:0043204 [perikaryon]
GO:0044295 [axonal growth cone]
GO:0045202 [synapse]
GO:0060317 [cardiac epithelial to mesenchymal transition]
Show all
485 aa
55.3 kDa
Yes 0
OLFM1-205
ENSP00000360861
ENST00000371796
Q99784
[Direct mapping] Noelin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003190 [atrioventricular valve formation]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0023041 [neuronal signal transduction]
GO:0030424 [axon]
GO:0030516 [regulation of axon extension]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043065 [positive regulation of apoptotic process]
GO:0043204 [perikaryon]
GO:0044295 [axonal growth cone]
GO:0045202 [synapse]
GO:0060317 [cardiac epithelial to mesenchymal transition]
Show all
458 aa
52.8 kDa
No 0
OLFM1-206
ENSP00000360864
ENST00000371799
Q6IMJ6
[Direct mapping] NOELIN1_V5; Noelin
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
167 aa
18.9 kDa
Yes 0
OLFM1-207
ENSP00000360866
ENST00000371801
Q5VZL8
[Direct mapping] Noelin
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
129 aa
13.8 kDa
Yes 0
OLFM1-208
ENSP00000376717
ENST00000392991
Q99784
[Direct mapping] Noelin
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003190 [atrioventricular valve formation]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010628 [positive regulation of gene expression]
GO:0010629 [negative regulation of gene expression]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0023041 [neuronal signal transduction]
GO:0030424 [axon]
GO:0030516 [regulation of axon extension]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043065 [positive regulation of apoptotic process]
GO:0043204 [perikaryon]
GO:0044295 [axonal growth cone]
GO:0045202 [synapse]
GO:0060317 [cardiac epithelial to mesenchymal transition]
Show all
153 aa
17.2 kDa
Yes 0
OLFM1-210
ENSP00000444296
ENST00000539529
F5GZQ2
[Direct mapping] Noelin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0007399 [nervous system development]
Show all
129 aa
15.3 kDa
No 0
OLFM1-211
ENSP00000443806
ENST00000539877
F5H810
[Direct mapping] Noelin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0007399 [nervous system development]
GO:0045202 [synapse]
Show all
208 aa
24.2 kDa
No 0
OLFM1-212
ENSP00000437906
ENST00000545657
H0YFB9
[Direct mapping] Noelin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0007399 [nervous system development]
Show all
99 aa
11.4 kDa
No 0

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