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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:45.8 nTPM
GTEx:45.8 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:90.0 nTPM
Mouse:154.0 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 45.8
Samples: 105

Max nTPM: 73.1
Min nTPM: 27.2
Std nTPM: 8.5
Median nTPM:
447_1 81 years, male 73.1
218_1 71 years, female 72.3
321_1 62 years, female 67.1
384_1 83 years, male 65.0
377_1 82 years, female 61.0
237_1 82 years, male 60.8
173_1 67 years, male 57.9
316_1 62 years, male 57.3
491_1 89 years, female 57.1
243_1 75 years, male 56.4
490_1 67 years, female 55.8
177_1 74 years, male 55.5
413_1 59 years, female 55.4
376_1 75 years, female 55.1
379_1 60 years, male 54.4
322_1 76 years, male 54.2
324_1 76 years, male 54.2
348_1 84 years, male 53.6
229_1 69 years, female 53.5
335_1 73 years, female 53.4
386_1 76 years, male 53.0
375_1 74 years, female 52.6
404_1 82 years, female 52.3
172_1 72 years, female 52.0
293_1 68 years, female 51.8
311_1 78 years, male 51.3
246_1 77 years, male 50.8
414_1 84 years, female 50.8
320_1 89 years, female 50.7
452_1 88 years, female 50.7
396_1 62 years, male 50.2
405_1 91 years, male 49.5
265_1 87 years, male 49.1
501_1 88 years, male 49.1
291_1 76 years, male 48.8
480_1 63 years, male 48.8
518_1 75 years, female 48.6
468_1 89 years, male 48.0
352_1 62 years, male 47.7
4_1 88 years, female 47.4
495_1 57 years, female 47.3
350_1 84 years, female 46.8
189_1 76 years, male 46.6
354_1 81 years, female 46.6
526_1 61 years, male 46.3
139_1 64 years, female 46.2
406_1 79 years, male 46.2
315_1 62 years, female 46.1
506_1 65 years, male 45.9
415_1 77 years, female 45.7
313_1 79 years, female 45.6
318_1 68 years, male 45.5
317_1 60 years, male 45.3
319_1 81 years, male 45.2
425_1 59 years, female 45.0
254_1 77 years, female 44.6
351_1 91 years, male 44.2
145_1 84 years, male 44.0
251_1 78 years, male 44.0
17_1 71 years, male 43.9
163_1 78 years, male 43.3
347_1 72 years, male 42.8
153_1 70 years, female 42.7
2_1 77 years, female 42.6
6_1 73 years, female 42.6
81_1 67 years, male 42.6
503_1 68 years, male 42.2
314_1 67 years, male 42.0
18_1 88 years, male 41.9
264_1 73 years, female 41.4
349_1 83 years, male 41.2
466_1 57 years, female 41.2
517_1 88 years, male 41.0
356_1 87 years, female 40.6
307_1 66 years, female 40.4
295_1 61 years, female 40.3
355_1 70 years, female 40.3
41_1 94 years, female 40.0
286_1 68 years, female 40.0
43_1 64 years, female 39.8
120_1 70 years, female 39.8
288_1 66 years, female 39.8
89_1 63 years, male 39.6
292_1 71 years, male 39.6
126_1 63 years, male 39.0
499_1 55 years, female 39.0
119_1 70 years, female 38.9
353_1 82 years, female 38.9
266_1 85 years, male 38.8
32_1 67 years, male 38.7
115_1 83 years, male 37.0
217_1 76 years, male 36.6
142_1 61 years, female 36.3
35_1 74 years, female 36.0
149_1 88 years, male 35.8
162_1 79 years, female 35.4
99_1 64 years, male 35.1
389_1 86 years, female 34.5
9_1 66 years, female 33.6
117_1 61 years, male 33.1
308_1 70 years, female 32.9
109_1 81 years, female 32.3
394_1 75 years, female 30.2
42_1 85 years, male 28.1
137_1 83 years, male 27.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 18.5
FF:10030-101E3 24-65 years, mixed 18.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.0
Pig sample Sample description nTPM
Retina
nTPM: 90.1
Samples: 4

Max nTPM: 106.4
Min nTPM: 78.8
Sample A Female 78.8
Sample B Female 106.4
Sample C Male 86.6
Sample D Male 88.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.0
Mouse sample Sample description nTPM
Retina
nTPM: 154.0
Samples: 4

Max nTPM: 157.5
Min nTPM: 146.6
Sample A Male 146.6
Sample B Male 156.8
Sample C Female 157.5
Sample D Female 155.0

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