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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:157.7 nTPM
HPA Brain:142.2 nTPM
GTEx:157.7 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:137.5 nTPM
Allen mouse:5.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.2
Sample id Sample description nTPM
Amygdala
nTPM: 124.1
2814 Male, age 76, right hemisphere 139.1
2517 Female, age 94, left hemisphere 137.8
2514 Male, age 75, right hemisphere 114.9
1987 Female, age 91, left hemisphere 114.6
2695 Female, age 67, right hemisphere 114.3
Basal amygdala
nTPM: 137.1
2685 Female, age 94, left hemisphere 152.3
2827 Female, age 67, right hemisphere 150.7
2243 Female, age 91, right hemisphere 142.6
2609 Male, age 75, right hemisphere 131.5
2110 Male, age 80, left hemisphere 128.8
1955 Male, age 76, both hemispheres 116.7
Central amygdala
nTPM: 139.9
2826 Female, age 94, left hemisphere 196.5
2239 Male, age 80, left hemisphere 134.7
2515 Male, age 75, right hemisphere 126.6
1905 Male, age 76, both hemispheres 124.9
2701 Female, age 91, right hemisphere 117.1
Corticomedial amygdala
nTPM: 134.4
2829 Male, age 80, left hemisphere 149.3
2429 Female, age 94, left hemisphere 148.3
2535 Female, age 67, right hemisphere 146.2
2242 Female, age 91, right hemisphere 126.4
2428 Male, age 75, right hemisphere 123.8
2240 Male, age 76, both hemispheres 112.1
Lateral amygdala
nTPM: 142.2
2534 Female, age 94, left hemisphere 185.6
2516 Male, age 75, right hemisphere 140.4
2830 Female, age 67, right hemisphere 140.1
2256 Male, age 80, left hemisphere 131.2
1883 Male, age 76, both hemispheres 128.9
2255 Female, age 91, right hemisphere 127.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 157.7
Samples: 152

Max nTPM: 509.2
Min nTPM: 53.5
Std nTPM: 53.4
Median nTPM: 147.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 509.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 330.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 296.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 288.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 258.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 254.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 252.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 248.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 238.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 230.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 225.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 223.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 223.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 221.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 220.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 215.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 213.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 210.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 207.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 207.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 206.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 205.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 203.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 203.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 202.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 202.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 200.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 199.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 198.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 198.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 197.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 193.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 190.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 184.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 184.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 182.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 182.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 180.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 180.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 174.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 174.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 173.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 172.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 172.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 171.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 171.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 169.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 168.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 167.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 167.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 165.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 164.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 164.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 164.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 164.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 164.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 164.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 162.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 162.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 161.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 161.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 160.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 157.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 156.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 156.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 154.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 153.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 152.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 152.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 150.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 149.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 147.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 146.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 146.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 145.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 145.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 145.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 143.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 143.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 143.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 141.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 141.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 139.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 139.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 139.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 137.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 137.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 136.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 135.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 135.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 133.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 133.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 132.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 131.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 131.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 130.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 129.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 129.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 129.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 128.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 125.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 123.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 121.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 120.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 119.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 116.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 116.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 115.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 113.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 113.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 113.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 113.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 113.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 111.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 111.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 111.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 111.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 110.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 109.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 109.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 108.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 108.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 107.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 104.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 102.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 102.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 101.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 99.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 96.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 94.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 92.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 89.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 84.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 83.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 53.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 64.4
FF:10151-102I7 76 years, female 64.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.7
Pig sample Sample description nTPM
Amygdala
nTPM: 58.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 46.2
Sample A Female 81.0
Sample B Female 54.4
Sample C Male 53.0
Sample D Male 46.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.5
Samples: 4

Max nTPM: 146.1
Min nTPM: 118.2
Sample A Male 146.0
Sample B Male 139.6
Sample C Female 146.1
Sample D Female 118.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.7
69028246 Antisense, RP_050315_01_G07, Mouse strain C57BL/6J (56 days, male) 5.7

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