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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:68.9 nTPM
HPA Brain:112.0 nTPM
GTEx:68.9 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:60.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 103.8
2565 Male, age 75, midline 121.1
1981 Female, age 72, midline 112.1
2194 Female, age 79, both hemispheres 97.7
2816 Male, age 47, midline 97.2
2048 Male, age 55, midline 91.0
Cervical spinal cord, dorsal horn
nTPM: 103.2
2296 Male, age 66, both hemispheres 130.3
2069 Male, age 47, both hemispheres 116.0
2173 Female, age 72, unknown 115.5
1877 Male, age 55, unknown 101.3
2297 Male, age 75, both hemispheres 87.3
2721 Male, age 90, both hemispheres 68.5
Cervical spinal cord, ventral horn
nTPM: 112.0
2809 Male, age 90, both hemispheres 133.5
2098 Female, age 72, unknown 132.5
2480 Male, age 75, both hemispheres 115.2
2295 Male, age 66, both hemispheres 103.6
2068 Male, age 55, unknown 97.3
2820 Female, age 79, both hemispheres 89.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 68.9
Samples: 159

Max nTPM: 106.7
Min nTPM: 47.9
Std nTPM: 10.6
Median nTPM: 68.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 106.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 103.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 102.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 94.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 93.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 91.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 90.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 85.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 84.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 84.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 84.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 84.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 84.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 83.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 83.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 83.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 82.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 81.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 81.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 81.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 80.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 79.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 79.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 78.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 77.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 77.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 77.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 76.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 76.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 76.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 75.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 75.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 75.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 74.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 74.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 74.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 74.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 74.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 74.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 73.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 73.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 73.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 73.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 72.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 72.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 72.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 72.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 72.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 71.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 71.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 71.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 71.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 71.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 71.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 71.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 70.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 70.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 70.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 70.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 70.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 70.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 70.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 70.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 69.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 69.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 69.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 69.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 69.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 69.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 68.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 68.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 68.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 68.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 68.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 68.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 68.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 68.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 67.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 67.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 66.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 66.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 66.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 66.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 66.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 66.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 66.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 66.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 65.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 65.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 65.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 65.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 65.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 64.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 64.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 64.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 64.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 64.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 64.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 64.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 63.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 63.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 63.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 63.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 62.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 62.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 62.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 62.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 62.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 61.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 61.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 61.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 61.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 61.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 61.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 61.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 60.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 60.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 60.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 60.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 60.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 60.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 60.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 59.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 59.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 59.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 59.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 59.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 59.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 58.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 58.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 58.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 57.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 57.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 57.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 57.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 56.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 56.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 56.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 55.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 55.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 55.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 54.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 53.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 52.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 52.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 50.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 50.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 49.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 49.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 48.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 47.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.0
FF:10159-103A6 76 years, female 49.3
FF:10181-103D1 60 years, female 30.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.1
Samples: 4

Max nTPM: 68.1
Min nTPM: 55.3
Sample A Female 58.0
Sample B Female 55.3
Sample C Male 68.1
Sample D Male 58.9
Ventral spinal cord
nTPM: 60.5
Samples: 4

Max nTPM: 62.4
Min nTPM: 59.2
Sample A Female 59.2
Sample B Female 59.8
Sample C Male 62.4
Sample D Male 60.4

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