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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:138.1 nTPM
HPA Brain:63.2 nTPM
GTEx:138.1 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:29.9 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.2
Sample id Sample description nTPM
Amygdala
nTPM: 58.6
2517 Female, age 94, left hemisphere 70.6
2814 Male, age 76, right hemisphere 66.2
1987 Female, age 91, left hemisphere 59.0
2514 Male, age 75, right hemisphere 49.7
2695 Female, age 67, right hemisphere 47.3
Basal amygdala
nTPM: 60.6
2243 Female, age 91, right hemisphere 69.7
2685 Female, age 94, left hemisphere 67.7
2110 Male, age 80, left hemisphere 64.5
1955 Male, age 76, both hemispheres 60.0
2609 Male, age 75, right hemisphere 59.6
2827 Female, age 67, right hemisphere 42.1
Central amygdala
nTPM: 63.2
2826 Female, age 94, left hemisphere 88.8
2239 Male, age 80, left hemisphere 60.2
1905 Male, age 76, both hemispheres 58.9
2515 Male, age 75, right hemisphere 57.6
2701 Female, age 91, right hemisphere 50.4
Corticomedial amygdala
nTPM: 57.9
2829 Male, age 80, left hemisphere 62.3
2242 Female, age 91, right hemisphere 61.0
2535 Female, age 67, right hemisphere 60.5
2429 Female, age 94, left hemisphere 59.3
2240 Male, age 76, both hemispheres 53.0
2428 Male, age 75, right hemisphere 51.4
Lateral amygdala
nTPM: 61.0
2534 Female, age 94, left hemisphere 87.9
2516 Male, age 75, right hemisphere 61.9
2255 Female, age 91, right hemisphere 59.8
1883 Male, age 76, both hemispheres 57.0
2256 Male, age 80, left hemisphere 52.7
2830 Female, age 67, right hemisphere 46.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 138.1
Samples: 152

Max nTPM: 387.1
Min nTPM: 28.0
Std nTPM: 51.9
Median nTPM: 129.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 387.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 373.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 291.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 231.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 215.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 211.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 211.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 209.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 207.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 207.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 207.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 202.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 195.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 192.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 191.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 183.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 183.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 182.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 182.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 182.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 179.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 179.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 178.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 178.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 177.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 174.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 173.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 172.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 171.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 170.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 170.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 167.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 164.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 163.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 163.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 162.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 162.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 162.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 161.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 160.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 157.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 156.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 153.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 152.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 152.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 148.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 148.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 147.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 144.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 144.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 143.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 143.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 143.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 140.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 139.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 138.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 138.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 137.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 137.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 136.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 136.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 135.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 134.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 131.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 130.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 129.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 129.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 129.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 129.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 129.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 128.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 128.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 127.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 125.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 124.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 124.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 124.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 123.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 122.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 121.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 119.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 119.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 117.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 114.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 114.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 113.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 112.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 111.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 111.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 111.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 110.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 109.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 108.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 108.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 108.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 105.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 104.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 102.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 99.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 98.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 95.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 94.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 94.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 94.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 91.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 84.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 84.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 80.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 79.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 78.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 76.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 74.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 73.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 73.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 71.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 65.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 28.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 58.0
FF:10151-102I7 76 years, female 58.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.8
Pig sample Sample description nTPM
Amygdala
nTPM: 24.8
Samples: 4

Max nTPM: 37.1
Min nTPM: 17.6
Sample A Female 37.1
Sample B Female 17.6
Sample C Male 20.0
Sample D Male 24.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.9
Samples: 4

Max nTPM: 31.0
Min nTPM: 28.9
Sample A Male 29.4
Sample B Male 28.9
Sample C Female 30.3
Sample D Female 31.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
74581002 Antisense, RP_060215_02_D01, Mouse strain C57BL/6J (56 days, male) 0.0

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