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YIPF2
HPA
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  • YIPF2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

YIPF2
Synonyms FinGER2, MGC3262
Gene descriptioni

Full gene name according to HGNC.

Yip1 domain family member 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband p13.2
Chromosome location (bp) 10922185 - 10928681
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000130733 (version 109)
Entrez gene 78992
HGNC HGNC:28476
UniProt Q9BWQ6 (UniProt - Evidence at protein level)
neXtProt NX_Q9BWQ6
GeneCards YIPF2
Antibodypedia YIPF2 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable small GTPase binding activity. Predicted to be involved in vesicle-mediated transport. Located in Golgi apparatus subcompartment and transport vesicle. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
YIPF2-201
ENSP00000253031
ENST00000253031
Q9BWQ6
[Direct mapping] Protein YIPF2
Show all
A0A024R7E1
[Target identity:100%; Query identity:100%] Protein YIPF
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000138 [Golgi trans cisterna]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005797 [Golgi medial cisterna]
GO:0005802 [trans-Golgi network]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030133 [transport vesicle]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
316 aa
35.2 kDa
No 5
YIPF2-202
ENSP00000464839
ENST00000585858
K7EIP7
[Direct mapping] Protein YIPF
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
186 aa
20.7 kDa
No 3
YIPF2-203
ENSP00000466408
ENST00000586575
K7EM92
[Direct mapping] Protein YIPF
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
103 aa
11.5 kDa
No 3
YIPF2-204
ENSP00000466055
ENST00000586748
Q9BWQ6
[Direct mapping] Protein YIPF2
Show all
A0A024R7E1
[Target identity:100%; Query identity:100%] Protein YIPF
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000138 [Golgi trans cisterna]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005797 [Golgi medial cisterna]
GO:0005802 [trans-Golgi network]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0030133 [transport vesicle]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
316 aa
35.2 kDa
No 5
YIPF2-205
ENSP00000465943
ENST00000587943
K7EL70
[Direct mapping] Protein YIPF
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
84 aa
9.3 kDa
No 3
YIPF2-206
ENSP00000468436
ENST00000588347
K7ERW0
[Direct mapping] Protein YIPF
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
217 aa
24.5 kDa
No 3
YIPF2-208
ENSP00000467156
ENST00000589971
K7ENZ5
[Direct mapping] Protein YIPF2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
206 aa
22.6 kDa
No 0
YIPF2-209
ENSP00000467019
ENST00000590329
K7ENM8
[Direct mapping] Protein YIPF
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
277 aa
30.8 kDa
No 4
YIPF2-210
ENSP00000465257
ENST00000591872
K7EJN9
[Direct mapping] Protein YIPF2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
Show all
79 aa
8.4 kDa
No 1
YIPF2-212
ENSP00000467829
ENST00000592646
K7EQH3
[Direct mapping] Protein YIPF
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005794 [Golgi apparatus]
GO:0010008 [endosome membrane]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0031267 [small GTPase binding]
GO:0031902 [late endosome membrane]
Show all
169 aa
18.8 kDa
No 4

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