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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:98.9 nTPM
HPA Brain:79.6 nTPM
GTEx:98.9 nTPM
FANTOM5:97.9 Scaled Tags Per Million
Pig:95.5 nTPM
Mouse:100.3 nTPM
Allen mouse:17.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.6
Sample id Sample description nTPM
Amygdala
nTPM: 79.6
2695 Female, age 67, right hemisphere 87.8
2514 Male, age 75, right hemisphere 80.5
2814 Male, age 76, right hemisphere 78.5
1987 Female, age 91, left hemisphere 76.5
2517 Female, age 94, left hemisphere 74.8
Basal amygdala
nTPM: 69.8
2827 Female, age 67, right hemisphere 77.2
2609 Male, age 75, right hemisphere 75.8
2110 Male, age 80, left hemisphere 72.4
2243 Female, age 91, right hemisphere 68.8
2685 Female, age 94, left hemisphere 62.8
1955 Male, age 76, both hemispheres 61.6
Central amygdala
nTPM: 77.0
2826 Female, age 94, left hemisphere 97.4
2515 Male, age 75, right hemisphere 81.0
1905 Male, age 76, both hemispheres 76.8
2239 Male, age 80, left hemisphere 71.5
2701 Female, age 91, right hemisphere 58.2
Corticomedial amygdala
nTPM: 65.5
2428 Male, age 75, right hemisphere 77.0
2829 Male, age 80, left hemisphere 66.9
2242 Female, age 91, right hemisphere 66.4
2535 Female, age 67, right hemisphere 66.1
2240 Male, age 76, both hemispheres 59.9
2429 Female, age 94, left hemisphere 56.8
Lateral amygdala
nTPM: 77.2
2830 Female, age 67, right hemisphere 93.6
2516 Male, age 75, right hemisphere 85.2
2534 Female, age 94, left hemisphere 80.1
2256 Male, age 80, left hemisphere 70.9
1883 Male, age 76, both hemispheres 66.6
2255 Female, age 91, right hemisphere 66.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 98.9
Samples: 152

Max nTPM: 204.3
Min nTPM: 49.7
Std nTPM: 25.7
Median nTPM: 92.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 204.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 193.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 166.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 163.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 161.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 159.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 159.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 158.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 157.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 154.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 149.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 148.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 141.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 138.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 133.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 128.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 124.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 120.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 118.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 118.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 117.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 116.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 116.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 114.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 113.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 113.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 112.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 110.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 109.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 109.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 108.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 108.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 108.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 106.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 106.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 106.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 105.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 104.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 103.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 102.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 101.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 100.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 99.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 99.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 99.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 99.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 98.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 98.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 97.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 97.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 96.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 95.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 95.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 94.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 94.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 94.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 92.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 92.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 92.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 91.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 91.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 90.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 90.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 90.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 90.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 90.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 90.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 89.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 89.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 88.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 88.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 87.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 87.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 87.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 86.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 86.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 86.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 86.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 86.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 86.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 86.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 86.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 85.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 85.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 85.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 84.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 84.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 83.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 83.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 83.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 82.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 82.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 82.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 80.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 80.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 79.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 78.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 78.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 78.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 78.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 75.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 74.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 73.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 73.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 71.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 69.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 69.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 66.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 58.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 49.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 49.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 97.9
FF:10151-102I7 76 years, female 97.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.5
Pig sample Sample description nTPM
Amygdala
nTPM: 95.5
Samples: 4

Max nTPM: 124.9
Min nTPM: 70.5
Sample A Female 124.9
Sample B Female 95.4
Sample C Male 91.2
Sample D Male 70.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.3
Samples: 4

Max nTPM: 101.7
Min nTPM: 98.8
Sample A Male 101.7
Sample B Male 100.7
Sample C Female 98.8
Sample D Female 100.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.3
293259 Antisense, RP_040617_01_A06, Mouse strain C57BL/6J (56 days, male) 18.8
81599612 Antisense, RP_071126_01_B12, Mouse strain C57BL/6J (56 days, male) 15.7

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