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ATP6V1E1
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  • ATP6V1E1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:221.3 nTPM
HPA Brain:150.3 nTPM
GTEx:221.3 nTPM
FANTOM5:194.3 Scaled Tags Per Million
Pig:0.1 nTPM
Mouse:559.8 nTPM
Allen mouse:25.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.3
Sample id Sample description nTPM
Amygdala
nTPM: 150.3
2814 Male, age 76, right hemisphere 203.4
2514 Male, age 75, right hemisphere 149.0
2517 Female, age 94, left hemisphere 139.6
1987 Female, age 91, left hemisphere 138.7
2695 Female, age 67, right hemisphere 120.8
Basal amygdala
nTPM: 133.5
2110 Male, age 80, left hemisphere 168.1
1955 Male, age 76, both hemispheres 154.0
2243 Female, age 91, right hemisphere 147.6
2685 Female, age 94, left hemisphere 129.1
2609 Male, age 75, right hemisphere 122.8
2827 Female, age 67, right hemisphere 79.2
Central amygdala
nTPM: 133.5
1905 Male, age 76, both hemispheres 169.7
2239 Male, age 80, left hemisphere 144.8
2515 Male, age 75, right hemisphere 121.7
2701 Female, age 91, right hemisphere 118.6
2826 Female, age 94, left hemisphere 112.5
Corticomedial amygdala
nTPM: 137.6
2829 Male, age 80, left hemisphere 175.0
2240 Male, age 76, both hemispheres 150.8
2429 Female, age 94, left hemisphere 145.6
2242 Female, age 91, right hemisphere 132.6
2428 Male, age 75, right hemisphere 131.5
2535 Female, age 67, right hemisphere 90.2
Lateral amygdala
nTPM: 124.9
1883 Male, age 76, both hemispheres 181.2
2534 Female, age 94, left hemisphere 143.5
2516 Male, age 75, right hemisphere 134.9
2256 Male, age 80, left hemisphere 108.7
2255 Female, age 91, right hemisphere 103.5
2830 Female, age 67, right hemisphere 77.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 221.3
Samples: 152

Max nTPM: 678.0
Min nTPM: 103.4
Std nTPM: 89.5
Median nTPM: 197.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 678.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 485.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 468.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 461.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 419.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 404.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 393.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 380.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 377.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 374.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 365.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 362.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 359.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 357.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 353.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 344.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 342.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 335.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 328.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 310.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 307.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 304.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 304.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 300.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 300.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 299.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 297.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 287.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 285.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 283.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 280.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 276.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 276.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 276.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 274.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 271.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 270.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 270.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 268.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 268.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 267.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 267.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 265.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 259.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 257.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 251.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 250.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 250.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 246.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 245.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 240.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 238.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 237.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 237.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 235.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 233.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 232.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 228.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 224.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 223.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 222.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 221.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 221.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 221.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 214.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 211.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 210.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 210.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 208.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 208.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 207.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 204.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 204.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 203.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 201.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 195.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 195.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 194.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 194.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 193.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 193.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 192.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 190.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 189.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 187.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 187.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 185.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 184.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 183.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 179.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 179.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 179.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 178.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 175.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 175.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 174.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 174.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 173.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 172.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 172.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 167.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 166.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 157.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 154.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 152.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 151.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 150.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 149.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 148.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 147.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 145.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 144.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 143.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 142.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 142.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 142.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 142.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 141.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 141.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 141.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 140.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 140.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 140.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 139.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 138.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 138.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 138.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 136.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 135.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 134.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 130.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 128.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 126.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 125.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 124.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 122.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 120.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 119.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 118.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 110.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 103.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

194.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 194.3
FF:10151-102I7 76 years, female 194.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Amygdala
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

559.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 559.8
Samples: 4

Max nTPM: 586.4
Min nTPM: 536.0
Sample A Male 564.6
Sample B Male 586.4
Sample C Female 552.2
Sample D Female 536.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.4
655501 Antisense, RP_040922_01_C02, Mouse strain C57BL/6J (56 days, male) 29.0
67979021 Antisense, RP_040923_02_A01, Mouse strain C57BL/6J (56 days, male) 21.8

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