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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:150.2 nTPM
HPA Brain:98.8 nTPM
GTEx:150.2 nTPM
FANTOM5:464.9 Scaled Tags Per Million
Pig:50.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 88.5
1981 Female, age 72, midline 118.2
2048 Male, age 55, midline 111.6
2816 Male, age 47, midline 78.4
2194 Female, age 79, both hemispheres 73.9
2565 Male, age 75, midline 60.6
Cervical spinal cord, dorsal horn
nTPM: 98.8
2173 Female, age 72, unknown 125.1
2296 Male, age 66, both hemispheres 123.3
2069 Male, age 47, both hemispheres 108.4
1877 Male, age 55, unknown 90.4
2297 Male, age 75, both hemispheres 73.0
2721 Male, age 90, both hemispheres 72.4
Cervical spinal cord, ventral horn
nTPM: 95.9
2098 Female, age 72, unknown 148.0
2480 Male, age 75, both hemispheres 99.9
2295 Male, age 66, both hemispheres 97.2
2809 Male, age 90, both hemispheres 96.8
2068 Male, age 55, unknown 68.9
2820 Female, age 79, both hemispheres 64.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.2
Samples: 159

Max nTPM: 261.5
Min nTPM: 76.0
Std nTPM: 32.4
Median nTPM: 149.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 261.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 240.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 226.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 217.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 210.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 210.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 209.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 208.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 205.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 203.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 202.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 201.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 196.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 187.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 187.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 183.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 182.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 182.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 181.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 181.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 181.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 181.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 179.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 178.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 177.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 177.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 176.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 175.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 175.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 175.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 175.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 174.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 174.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 174.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 173.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 172.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 172.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 172.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 172.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 170.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 169.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 169.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 169.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 168.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 168.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 165.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 165.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 165.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 164.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 163.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 163.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 162.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 161.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 161.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 161.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 161.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 160.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 160.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 159.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 159.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 157.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 155.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 155.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 155.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 154.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 154.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 152.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 152.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 151.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 151.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 151.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 150.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 150.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 149.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 149.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 149.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 148.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 148.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 147.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 147.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 146.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 146.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 145.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 145.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 144.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 143.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 142.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 142.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 142.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 142.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 142.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 141.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 140.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 140.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 139.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 138.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 138.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 138.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 136.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 136.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 135.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 134.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 133.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 133.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 132.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 132.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 130.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 129.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 129.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 128.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 127.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 125.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 125.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 123.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 123.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 122.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 122.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 121.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 120.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 120.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 120.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 119.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 119.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 119.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 119.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 118.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 118.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 117.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 117.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 115.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 114.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 113.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 111.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 109.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 107.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 106.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 106.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 104.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 103.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 98.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 96.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 95.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 94.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 93.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 88.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 82.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

464.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 464.9
FF:10159-103A6 76 years, female 528.8
FF:10181-103D1 60 years, female 400.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 47.9
Samples: 4

Max nTPM: 57.6
Min nTPM: 36.8
Sample A Female 36.8
Sample B Female 57.6
Sample C Male 54.5
Sample D Male 42.6
Ventral spinal cord
nTPM: 50.7
Samples: 4

Max nTPM: 57.7
Min nTPM: 41.5
Sample A Female 41.5
Sample B Female 49.9
Sample C Male 53.6
Sample D Male 57.7

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