MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.4 nTPM
HPA Brain:106.9 nTPM
GTEx:94.4 nTPM
FANTOM5:150.7 Scaled Tags Per Million
Pig:132.4 nTPM
Mouse:109.3 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 106.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.7
2019 Male, age 18, unknown 92.8
2411 Female, age 72, unknown 92.7
1870 Female, age 42, unknown 90.1
2666 Male, age 74, left hemisphere 90.1
2828 Female, age 72, unknown 86.6
1830 Male, age 51, unknown 85.3
1833 Male, age 53, unknown 85.3
1827 Male, age 72, unknown 83.0
2219 Male, age 76, both hemispheres 73.2
2586 Male, age 75, left hemisphere 68.0
Dorsal raphe nucleus
nTPM: 89.2
2750 Male, age 76, both hemispheres 98.9
2298 Female, age 72, unknown 93.2
1828 Male, age 53, unknown 89.3
2016 Female, age 72, unknown 82.8
2047 Male, age 72, unknown 81.8
Inferior colliculus
nTPM: 73.0
2097 Female, age 72, unknown 82.9
1890 Male, age 53, unknown 78.7
1848 Female, age 42, unknown 69.8
2849 Male, age 72, unknown 60.5
Median raphe nucleus
nTPM: 94.1
2220 Male, age 76, midline 94.1
Periaquaductal grey, anterior
nTPM: 86.2
1947 Male, age 18, unknown 96.0
2502 Female, age 75, unknown 82.8
1795 Male, age 51, unknown 79.8
Periaquaductal grey, dorsal
nTPM: 71.7
2850 Male, age 76, both hemispheres 76.3
1831 Male, age 72, unknown 75.8
2464 Female, age 72, unknown 70.6
1840 Male, age 53, unknown 64.0
Periaquaductal grey, lateral
nTPM: 75.2
2272 Male, age 74, both hemispheres 81.5
2053 Male, age 18, unknown 72.5
2140 Male, age 76, both hemispheres 71.6
Pretectal area
nTPM: 83.2
1817 Female, age 42, unknown 94.6
2007 Male, age 72, unknown 92.1
1815 Male, age 53, unknown 88.1
1816 Male, age 51, unknown 84.8
1944 Female, age 72, unknown 84.6
2316 Male, age 76, right hemisphere 82.8
2224 Female, age 72, unknown 81.4
2273 Male, age 74, both hemispheres 80.4
2407 Male, age 75, both hemispheres 77.3
2667 Female, age 75, unknown 76.2
2825 Male, age 18, unknown 73.3
Red nucleus
nTPM: 93.5
1821 Female, age 72, unknown 114.7
1904 Male, age 53, unknown 103.3
1865 Male, age 51, unknown 102.7
2725 Female, age 75, unknown 100.0
1954 Female, age 42, unknown 96.1
2785 Male, age 18, unknown 94.3
2503 Female, age 72, unknown 91.6
2769 Male, age 72, unknown 91.3
2227 Male, age 72, unknown 90.7
2823 Male, age 76, right hemisphere 89.2
2584 Male, age 75, left hemisphere 75.2
2588 Male, age 74, left hemisphere 72.5
Substantia nigra
nTPM: 106.9
1916 Female, age 42, unknown 138.4
1851 Male, age 51, unknown 120.1
2241 Male, age 72, unknown 119.4
2409 Female, age 72, unknown 106.1
2590 Female, age 75, unknown 102.0
2665 Male, age 74, both hemispheres 101.1
2699 Male, age 18, unknown 100.3
1941 Male, age 53, unknown 96.7
1889 Female, age 72, unknown 93.6
2583 Male, age 75, right hemisphere 91.5
Superior colliculus
nTPM: 81.5
2587 Male, age 74, left hemisphere 96.7
1913 Female, age 42, unknown 90.4
2668 Female, age 75, unknown 88.4
1995 Male, age 72, unknown 84.2
1796 Male, age 53, unknown 83.2
2261 Male, age 18, unknown 80.5
2087 Female, age 72, unknown 78.1
1895 Male, age 76, right hemisphere 76.8
1839 Male, age 51, unknown 73.6
2664 Male, age 75, both hemispheres 63.5
Ventral tegmental area
nTPM: 101.4
1915 Female, age 42, unknown 109.9
2410 Female, age 72, unknown 107.1
2223 Female, age 72, unknown 103.8
2218 Male, age 76, both hemispheres 102.2
1942 Male, age 51, unknown 92.6
2021 Male, age 53, unknown 92.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 94.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.4
Samples: 139

Max nTPM: 142.9
Min nTPM: 63.8
Std nTPM: 15.3
Median nTPM: 92.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 142.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 131.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 130.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 129.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 128.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 123.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 123.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 123.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 120.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 117.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 150.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 150.7
FF:10158-103A5 76 years, female 150.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 132.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 132.1
Samples: 4

Max nTPM: 153.4
Min nTPM: 118.2
Sample A Female 153.4
Sample B Female 121.9
Sample C Male 135.0
Sample D Male 118.2
Midbrain
nTPM: 132.4
Samples: 4

Max nTPM: 193.2
Min nTPM: 94.3
Sample A Female 193.2
Sample B Female 115.0
Sample C Male 127.0
Sample D Male 94.3
Periaqueductal gray
nTPM: 99.2
Samples: 3

Max nTPM: 107.0
Min nTPM: 91.8
Sample B Female 98.7
Sample C Male 107.0
Sample D Male 91.8
Superior colliculi
nTPM: 128.6
Samples: 4

Max nTPM: 142.4
Min nTPM: 113.8
Sample A Female 138.8
Sample B Female 113.8
Sample C Male 142.4
Sample D Male 119.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 109.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.3
Samples: 4

Max nTPM: 115.7
Min nTPM: 105.0
Sample A Male 105.0
Sample B Male 106.7
Sample C Female 115.7
Sample D Female 109.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
323396 Antisense, RP_040617_01_A03, Mouse strain C57BL/6J (56 days, male) 8.1
76081921 Antisense, RP_060626_01_A01, Mouse strain C57BL/6J (56 days, male) 7.6

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